View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12612_high_5 (Length: 353)
Name: NF12612_high_5
Description: NF12612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12612_high_5 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 58 - 332
Target Start/End: Original strand, 15409 - 15683
Alignment:
| Q |
58 |
ctctaaacgttcctcttaattttctttaaattaaattcatgatacttaattaatcatttaaacatttcatcaaatgtgattacagcttagggtgtcaggg |
157 |
Q |
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| T |
15409 |
ctctaaacgttcttcttaattttctttaaattaaattcatgatacttaattaatcatttaaacatttcatcaaatgtgattacagcttagggtgtcaggg |
15508 |
T |
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| Q |
158 |
ctaatcagcaatggaccttatgtacttgtggtagattgtgatatgaattgtaatgatgcatcatcagccaaacaatctatgtgcttttttcttgatcctg |
257 |
Q |
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| T |
15509 |
ctaatcagcaatggaccttatgttcttgtggtagattgtgatatgaattgtaatgatgcatcatcagccaaacaatctatgtgcttttttcttgatcctg |
15608 |
T |
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| Q |
258 |
aaacctctaaagatgttgcttttgttcaattcccacaaatgtttcacaaccttagcaagaaagacatatatgata |
332 |
Q |
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| T |
15609 |
aaacctctaaagatgttgcttttgttcaattccctcaaatgtttcacaaccttagcaagaaagacatatatgata |
15683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 15262 - 15295
Alignment:
| Q |
11 |
caaaggaggagctctcaatacattggtatgtact |
44 |
Q |
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| T |
15262 |
caaaggaggagctctcaatacattggtatgtact |
15295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 11 - 328
Target Start/End: Complemental strand, 16383326 - 16383011
Alignment:
| Q |
11 |
caaaggaggagctctcaatacattggtatgtactcatttaatttgatctctaaacgttcctcttaattttctttaaa----ttaaattcatgatacttaa |
106 |
Q |
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| T |
16383326 |
caaaggaggagctctcaatacattggtgtgtactcatttaatttaatctctaaacaatgctcataattttctcaatacatattatatgcat-atactta- |
16383229 |
T |
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| Q |
107 |
ttaatcatttaaacatttcatcaaatgtgattacagcttagggtgtcagggctaatcagcaatggaccttatgtacttgtggtagattgtgatatgaatt |
206 |
Q |
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| T |
16383228 |
----tcatttaaacatttcatcaaatgtgattacagcttagggtatcagggctaatcagcaatggcccttatgttcttattgtagattgtgatatgaatt |
16383133 |
T |
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| Q |
207 |
gtaatgatgcatcatcagccaaacaatctatgtgcttttttcttgatcctgaaacctctaaagatgttgcttttgttcaattcccacaaatgtttcacaa |
306 |
Q |
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| T |
16383132 |
gtaatgattcatcatcagccaaacaatccatgtgcttttttcttgatcctaaaatatctcaagatcttgcttttgtccaattccctcaaatgtttcacaa |
16383033 |
T |
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| Q |
307 |
ccttagcaagaaagacatatat |
328 |
Q |
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| T |
16383032 |
cattagcaagaaagacatatat |
16383011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 140 - 332
Target Start/End: Complemental strand, 17582106 - 17581914
Alignment:
| Q |
140 |
cagcttagggtgtcagggctaatcagcaatggaccttatgtacttgtggtagattgtgatatgaattgtaatgatgcatcatcagccaaacaatctatgt |
239 |
Q |
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| T |
17582106 |
cagctaagggtttcagggctaatcagcaatggcccttatgtacttgtcttagattgtgatatgaattgtaatgattcatcatcagccaaacaatccatgt |
17582007 |
T |
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| Q |
240 |
gcttttttcttgatcctgaaacctctaaagatgttgcttttgttcaattcccacaaatgtttcacaaccttagcaagaaagacatatatgata |
332 |
Q |
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| T |
17582006 |
gcttttttcttgatcctgaaacctccaaagatcttgcttttgtccaattccctcaaatgtttcacaacctcagcaagaaagatatatatgata |
17581914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 159 - 332
Target Start/End: Original strand, 271589 - 271762
Alignment:
| Q |
159 |
taatcagcaatggaccttatgtacttgtggtagattgtgatatgaattgtaatgatgcatcatcagccaaacaatctatgtgcttttttcttgatcctga |
258 |
Q |
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||||||||||||||||||||||||||| || || ||||||||| |||||||||| |||| |||||||||||| | ||||| || ||||||||||| || |
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| T |
271589 |
taatcagcaatggaccttatgtacttgcagtggactgtgatatgtattgtaatgacccatcttcagccaaacaagccatgtgtttctttcttgatccaga |
271688 |
T |
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| Q |
259 |
aacctctaaagatgttgcttttgttcaattcccacaaatgtttcacaaccttagcaagaaagacatatatgata |
332 |
Q |
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| T |
271689 |
aacctctaaatatattgcatttgttcaattccctcaaatgtttcacaaccttagcaaaaaagacatctatgata |
271762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 17582755 - 17582673
Alignment:
| Q |
11 |
caaaggaggagctctcaatacattggtatgtactcatttaatttgatctctaaacgttcctcttaattttctttaaattaaat |
93 |
Q |
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| T |
17582755 |
caaaggaggagcacttaatacattggtgtgtactcatttaatttgatcttgagacattcctcttaatttactttaaattaaat |
17582673 |
T |
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