View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12612_high_6 (Length: 311)

Name: NF12612_high_6
Description: NF12612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12612_high_6
NF12612_high_6
[»] chr1 (7 HSPs)
chr1 (19-300)||(50073013-50073295)
chr1 (207-300)||(28351366-28351459)
chr1 (206-300)||(4646464-4646558)
chr1 (206-300)||(23635128-23635222)
chr1 (206-300)||(23713797-23713891)
chr1 (242-292)||(37192369-37192419)
chr1 (242-274)||(6478185-6478217)
[»] chr5 (7 HSPs)
chr5 (214-301)||(18148152-18148239)
chr5 (206-292)||(27166358-27166444)
chr5 (242-292)||(26072541-26072591)
chr5 (242-292)||(32228452-32228502)
chr5 (242-281)||(18090204-18090243)
chr5 (242-292)||(18359532-18359582)
chr5 (242-292)||(33169306-33169356)
[»] chr6 (5 HSPs)
chr6 (206-291)||(12429038-12429123)
chr6 (206-304)||(33185072-33185170)
chr6 (242-282)||(17330629-17330669)
chr6 (242-292)||(13937348-13937398)
chr6 (242-292)||(20883472-20883522)
[»] chr2 (7 HSPs)
chr2 (241-300)||(44472998-44473057)
chr2 (222-292)||(15917301-15917371)
chr2 (242-292)||(42563113-42563163)
chr2 (242-292)||(40176318-40176368)
chr2 (244-292)||(3400632-3400680)
chr2 (242-290)||(15391793-15391841)
chr2 (242-290)||(33516226-33516274)
[»] chr3 (7 HSPs)
chr3 (214-301)||(16984095-16984181)
chr3 (236-292)||(15312230-15312286)
chr3 (217-274)||(20532452-20532509)
chr3 (242-290)||(17098318-17098366)
chr3 (242-292)||(963605-963655)
chr3 (242-292)||(50651790-50651840)
chr3 (242-290)||(11203469-11203517)
[»] scaffold0161 (1 HSPs)
scaffold0161 (242-292)||(6451-6501)
[»] chr8 (6 HSPs)
chr8 (207-301)||(45439279-45439373)
chr8 (242-292)||(25090035-25090085)
chr8 (242-292)||(34137405-34137455)
chr8 (242-290)||(12257893-12257941)
chr8 (242-290)||(12265285-12265333)
chr8 (242-290)||(17699132-17699180)
[»] chr4 (4 HSPs)
chr4 (221-292)||(19740461-19740532)
chr4 (207-292)||(48242027-48242111)
chr4 (242-292)||(5148309-5148359)
chr4 (242-292)||(36223531-36223581)
[»] chr7 (3 HSPs)
chr7 (242-292)||(48394552-48394602)
chr7 (242-292)||(37254406-37254456)
chr7 (245-290)||(18530160-18530205)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 50073013 - 50073295
Alignment:
Q  19 ttaagctaacgtgttcaatgtcaccttgaaactaagctttttcaaacaaacaattagtatcgttagttttttctattgcagtcggagattaaactcttga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50073013 ttaagctaacgtgttcaatgtcaccttgaaactaagctttttcaaacaaacaattagtatcgttagttttttctattgcagtcggagattaaactcttga 50073112  T
Q  119 ctccaacggcgaagaagttaacataaattttaagcgggagccaaattnnnnnnncaaattgtatatannnnnnnnaacaagccaactggttattcaagaa 218  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||       | |||||||||||        ||||||||||| |||||||||||||    
T  50073113 ctccaacggcgaagaagttaacaaaaattttaagcgggagccaaattaaaaaaacgaattgtatatattttttttaacaagccaacaggttattcaagaa 50073212  T
Q  219 cc-aacaaagctctatctcatatctgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatgctaccttt 300  Q
    || |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| | ||||| |||||||||    
T  50073213 ccaaacaaagctctatctcatatctattagataaagtaaaatcatattcatcgtggtcgttgaaagccagtaacgctaccttt 50073295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 207 - 300
Target Start/End: Complemental strand, 28351459 - 28351366
Alignment:
Q  207 gttattcaagaaccaacaaagctctatctcatatctgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatgctaccttt 300  Q
    |||||||||||| ||||||||||||||  || || ||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||    
T  28351459 gttattcaagaagcaacaaagctctattccacatttgttagataaagtaaaatcatattcattgtggtggttgaaagctagtaacgctaccttt 28351366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 206 - 300
Target Start/End: Original strand, 4646464 - 4646558
Alignment:
Q  206 ggttattcaagaaccaacaaagctctatctcatatctgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatgctaccttt 300  Q
    ||||||| | ||| ||||||||||||||   | |||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||    
T  4646464 ggttatttaggaatcaacaaagctctatactacatctgttagataaagtaaaatcatattctttgtggtggttgaaagctagtaatgctaccttt 4646558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 300
Target Start/End: Original strand, 23635128 - 23635222
Alignment:
Q  206 ggttattcaagaaccaacaaagctctatctcatatctgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatgctaccttt 300  Q
    ||||||||||||||||||||| | | ||  ||  | |||||||||||||||||||||||||  |||||| ||||||| | |||||  ||||||||    
T  23635128 ggttattcaagaaccaacaaaccaccattccacgtatgttagataaagtaaaatcatattctctgtggtggttgaaagcgagtaacactaccttt 23635222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 300
Target Start/End: Original strand, 23713797 - 23713891
Alignment:
Q  206 ggttattcaagaaccaacaaagctctatctcatatctgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatgctaccttt 300  Q
    ||||||||||||| ||||||| | ||||  ||  | |||||||||||||||||||||||||  | |||| ||||||| | |||||  ||||||||    
T  23713797 ggttattcaagaatcaacaaaccactattccacgtatgttagataaagtaaaatcatattctctatggtggttgaaagcgagtaacactaccttt 23713891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 37192369 - 37192419
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    |||||||||||||||||||| || | ||||||| ||||||| |||||||||    
T  37192369 tgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 37192419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 6478217 - 6478185
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggt 274  Q
    ||||||||||||||||||||||||| |||||||    
T  6478217 tgttagataaagtaaaatcatattccttgtggt 6478185  T

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Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 214 - 301
Target Start/End: Original strand, 18148152 - 18148239
Alignment:
Q  214 aagaaccaacaaagctctatctcatatctgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatgctacctttg 301  Q
    ||||||||||||||||||||  || || |||||||||||||||||||||| || ||||||| ||||||| ||||||| ||||||||||    
T  18148152 aagaaccaacaaagctctattccacatatgttagataaagtaaaatcatactctttgtggtggttgaaagctagtaacgctacctttg 18148239  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 206 - 292
Target Start/End: Original strand, 27166358 - 27166444
Alignment:
Q  206 ggttattcaagaaccaacaaagctctatctcatatctgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    ||||||| | ||||||||||||||||||  || || ||||||||||||||||||||||||| ||||||| ||||||| |||||||||    
T  27166358 ggttatttaggaaccaacaaagctctataccacatatgttagataaagtaaaatcatattctttgtggtggttgaaagctagtaatg 27166444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 26072591 - 26072541
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    ||||||||||||||||||| ||||| ||||||| ||||||| |||||||||    
T  26072591 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 26072541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 32228502 - 32228452
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    ||||||||||||||||||||||||  ||||||| ||||||| |||||||||    
T  32228502 tgttagataaagtaaaatcatattttttgtggtggttgaaagctagtaatg 32228452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 281
Target Start/End: Original strand, 18090204 - 18090243
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaa 281  Q
    ||||||||||||||||||| ||||||||||||| ||||||    
T  18090204 tgttagataaagtaaaatcctattcattgtggtggttgaa 18090243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 18359532 - 18359582
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    |||||||||||||||||||| || | ||||||| ||||||| |||||||||    
T  18359532 tgttagataaagtaaaatcacatactttgtggtggttgaaagctagtaatg 18359582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 33169356 - 33169306
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    ||||||||||||||||||||| ||| ||||||| | ||||| |||||||||    
T  33169356 tgttagataaagtaaaatcatgttccttgtggtggatgaaagctagtaatg 33169306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 12429038 - 12429123
Alignment:
Q  206 ggttattcaagaaccaacaaagctctatctcatatctgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaat 291  Q
    ||||||| | ||||||||||||||||||  || || ||||||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  12429038 ggttatttaggaaccaacaaagctctataccacatatgttagataaagtaaaatcatattctttgtggtagttgaaagctagtaat 12429123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 304
Target Start/End: Complemental strand, 33185170 - 33185072
Alignment:
Q  206 ggttattcaagaaccaacaaagctctatctcat-atctgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatgctacctttgctt 304  Q
    ||||||| ||||||||||||||||| || |||  |||||||||||||||| || |||||| | ||||||| ||||||| ||||||||||||| |||||||    
T  33185170 ggttatttaagaaccaacaaagctccat-tcagcatctgttagataaagtgaattcatatgctttgtggtggttgaaagctagtaatgctacatttgctt 33185072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 17330669 - 17330629
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaa 282  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  17330669 tgttagataaagtaaaatcatattctttgtggtggttgaaa 17330629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 13937398 - 13937348
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    ||||||||||||||||||||| ||| ||||||| | ||||| |||||||||    
T  13937398 tgttagataaagtaaaatcatgttccttgtggtggatgaaagctagtaatg 13937348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 20883472 - 20883522
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    |||||||||||||||||||| || | ||||||| ||||||| |||||||||    
T  20883472 tgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 20883522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 44473057 - 44472998
Alignment:
Q  241 ctgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatgctaccttt 300  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||| |||||||||||||    
T  44473057 ctgttagataaagtaaaatcatattctttgtggtggttgaaagctaataatgctaccttt 44472998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 15917371 - 15917301
Alignment:
Q  222 acaaagctctatctcatatctgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    ||||||||||||  || || ||||||||||||||||||||||||| ||||||| ||||||| |||||||||    
T  15917371 acaaagctctataccacatatgttagataaagtaaaatcatattctttgtggtggttgaaagctagtaatg 15917301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 42563163 - 42563113
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    ||||| ||||||||||||||||||| ||||||| ||||||| |||||||||    
T  42563163 tgttaaataaagtaaaatcatattccttgtggtggttgaaagctagtaatg 42563113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 40176368 - 40176318
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    |||||||||||||||||||| ||||  |||||| ||||||| |||||||||    
T  40176368 tgttagataaagtaaaatcaaattccatgtggtggttgaaagctagtaatg 40176318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 3400680 - 3400632
Alignment:
Q  244 ttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    ||||||||||||||||||||| | ||||||| ||||||| ||| |||||    
T  3400680 ttagataaagtaaaatcatataccttgtggtggttgaaagctattaatg 3400632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 15391841 - 15391793
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaa 290  Q
    ||||||||||||| ||||| ||||| ||||||| ||||||| |||||||    
T  15391841 tgttagataaagttaaatcttattccttgtggtggttgaaagctagtaa 15391793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 33516226 - 33516274
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaa 290  Q
    |||||||||||||||||||| ||||  |||||| ||||||| |||||||    
T  33516226 tgttagataaagtaaaatcaaattccatgtggtggttgaaagctagtaa 33516274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 301
Target Start/End: Complemental strand, 16984181 - 16984095
Alignment:
Q  214 aagaaccaacaaagctctatctcatatctgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatgctacctttg 301  Q
    |||||||||||||||| |||  ||  ||||||||||||| |||| ||||| || ||||||| ||||||| ||||||||||||||||||    
T  16984181 aagaaccaacaaagctttattccacttctgttagataaaataaa-tcatactctttgtggtggttgaaagctagtaatgctacctttg 16984095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 15312286 - 15312230
Alignment:
Q  236 catatctgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    ||||| ||||||||||| ||||||||||||| ||||||| ||||||| |||||||||    
T  15312286 catatatgttagataaactaaaatcatattccttgtggtggttgaaagctagtaatg 15312230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 20532452 - 20532509
Alignment:
Q  217 aaccaacaaagctctatctcatatctgttagataaagtaaaatcatattcattgtggt 274  Q
    |||||||||||||||||| |  ||||||||||||||||||| ||||| || |||||||    
T  20532452 aaccaacaaagctctatcacgcatctgttagataaagtaaagtcatactctttgtggt 20532509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 17098318 - 17098366
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaa 290  Q
    |||||||| |||||||||||||||| ||||||| ||||||| |||||||    
T  17098318 tgttagatgaagtaaaatcatattccttgtggtggttgaaatctagtaa 17098366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 963605 - 963655
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    ||||||||||||||||||||| ||| ||||||| | ||||| |||||||||    
T  963605 tgttagataaagtaaaatcatgttccttgtggtggatgaaagctagtaatg 963655  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 50651790 - 50651840
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    |||||| |||||||||||| ||||| ||||||| ||||||| |||||||||    
T  50651790 tgttaggtaaagtaaaatcttattccttgtggtggttgaaagctagtaatg 50651840  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 11203517 - 11203469
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaa 290  Q
    |||||||||||||||||||| || | ||||||| ||||||| |||||||    
T  11203517 tgttagataaagtaaaatcaaataccttgtggtggttgaaagctagtaa 11203469  T

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Target: scaffold0161 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 6451 - 6501
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    ||||||||||||||||||| ||||||||||||| ||||||| |||||||||    
T  6451 tgttagataaagtaaaatcttattcattgtggtggttgaaagctagtaatg 6501  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 45439279 - 45439373
Alignment:
Q  207 gttattcaagaaccaacaaagctctatctcatatctgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatgctacctttg 301  Q
    |||||| ||||||||||||||||| || ||| || ||||| |||||||||||| |||  | ||||||| |||||||  |||||| ||||||||||    
T  45439279 gttatttaagaaccaacaaagctcaatttcacatttgttatataaagtaaaattatacgctttgtggtggttgaaagttagtaaagctacctttg 45439373  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 25090085 - 25090035
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    |||||||||||||||||||| |||| ||||||| | ||||| |||||||||    
T  25090085 tgttagataaagtaaaatcaaattccttgtggtggctgaaagctagtaatg 25090035  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 34137405 - 34137455
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    ||||||| ||||||||||||| ||||||||||| ||| ||| |||||||||    
T  34137405 tgttagacaaagtaaaatcatcttcattgtggtggttaaaagctagtaatg 34137455  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 12257893 - 12257941
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaa 290  Q
    ||||||||||||||||||||||||   |||||| ||||||| |||||||    
T  12257893 tgttagataaagtaaaatcatattacatgtggtggttgaaagctagtaa 12257941  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 12265285 - 12265333
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaa 290  Q
    ||||||||||||||||||||||||   |||||| ||||||| |||||||    
T  12265285 tgttagataaagtaaaatcatattacatgtggtggttgaaagctagtaa 12265333  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 17699180 - 17699132
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaa 290  Q
    |||||||||||||||||||| || | ||||||| ||||||||| |||||    
T  17699180 tgttagataaagtaaaatcaaataccttgtggtggttgaaaaccagtaa 17699132  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 292
Target Start/End: Original strand, 19740461 - 19740532
Alignment:
Q  221 aacaaagctctatctcatatctgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    ||||||||||| | ||  || ||||||||||||||||||||||||| ||||||| | ||||| |||||||||    
T  19740461 aacaaagctctctatcgcatatgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatg 19740532  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 292
Target Start/End: Complemental strand, 48242111 - 48242027
Alignment:
Q  207 gttattcaagaaccaacaaagctctatctcatatctgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    |||||| |||||| |||||||||||  | || || ||||||||||||||||||||||||| ||||| | |||||||  ||||||||    
T  48242111 gttatttaagaacaaacaaagctctcac-cacatatgttagataaagtaaaatcatattccttgtgttggttgaaagttagtaatg 48242027  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 5148359 - 5148309
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    |||||||||||||||||||| || | ||||||| ||||||| |||||||||    
T  5148359 tgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 5148309  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 36223531 - 36223581
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    ||||||||||||||||||||||||| ||||| | | ||||| |||||||||    
T  36223531 tgttagataaagtaaaatcatattccttgtgatagctgaaagctagtaatg 36223581  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 48394602 - 48394552
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    ||||||||||| ||||||||||||| ||||||| ||||||| |||||||||    
T  48394602 tgttagataaaataaaatcatattccttgtggtggttgaaagctagtaatg 48394552  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 37254456 - 37254406
Alignment:
Q  242 tgttagataaagtaaaatcatattcattgtggtcgttgaaaactagtaatg 292  Q
    |||||||||||||||||||| || | ||||||| ||||||| |||||||||    
T  37254456 tgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 37254406  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 18530205 - 18530160
Alignment:
Q  245 tagataaagtaaaatcatattcattgtggtcgttgaaaactagtaa 290  Q
    ||||||||||||||||| || | ||||||| |||||||||||||||    
T  18530205 tagataaagtaaaatcacataccttgtggtggttgaaaactagtaa 18530160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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