View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12612_low_1 (Length: 526)
Name: NF12612_low_1
Description: NF12612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12612_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 8964541 - 8964022
Alignment:
| Q |
1 |
atttttataatcttcctctatgtaaagtgaaccatgcataaagatccacaagatggatctctcgcccaataaactttcttaatcttgtttcaaagaatct |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8964541 |
atttttataatcttcctctatataaagtgaaccatgcataaagatccacaagatggatctctcgcccaataaactttcttaatcttgtttcaaagaatct |
8964442 |
T |
|
| Q |
101 |
gccaccatattttttccaacaaagtgcactagtaatgtattcttccaaggtgcacataaagattaaactcatatagtacttacattattccaaaacttgn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
8964441 |
gccaccatattttttccaacaaagtgcactagtaatgtcttcttccaaggtgcacatcaagattaaactcaaatagtacttacattattccaatacttgt |
8964342 |
T |
|
| Q |
201 |
nnnnnnn-accattaaccaccactaaccatgcatttggatttcaaccatagtaacctt------atcctttaagaaattttattatttttatatcannnn |
293 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
8964341 |
ttttttttaccattaaccaccactaaccatgcatttggatttgaaccatagtaaccttgtccttatcctttaagaaattttattatttttatattatttt |
8964242 |
T |
|
| Q |
294 |
nnnnnggaacaaacttataacatttcattagaaatcaaggtataactatatgacggtgcatcaataaacaagtgggagctagcataaaatgacgatatct |
393 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8964241 |
ttt--ggaacaaacttataacatttcattagaaatcaaggtataactacatgatggtgcatcaataaacaagtgggagctagcataaaatgacgatattt |
8964144 |
T |
|
| Q |
394 |
tattcaagtctgagtgacccagtgacttaccatcgattaaactcgacattagagttttgaatattaacattaaacaattgttcacaaacattcataatac |
493 |
Q |
| |
|
|||||||||||||| |||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8964143 |
tattcaagtctgagcgacctagtgacttgccttcgattaaactcgacattagagttttgaatattaacattaaacaattgttcacaaacattcataatac |
8964044 |
T |
|
| Q |
494 |
taccaaatccagtaatatctct |
515 |
Q |
| |
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|||||||| || |||||||||| |
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| T |
8964043 |
taccaaattcaataatatctct |
8964022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 8955844 - 8956012
Alignment:
| Q |
1 |
atttttataatcttcctctatgtaaagtgaaccatgcataaagatccacaagatggatctctcgcccaataaactttcttaatcttgtttcaaagaatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8955844 |
atttttataatcttcctctatgtaaagtgaaccatgcataaagatccacaagatggatctctcgcccaataaactttcttaatcttgtttcaaagaattt |
8955943 |
T |
|
| Q |
101 |
gccaccatattttttccaacaaagtgcactagtaatgtattcttccaaggtgcacataaagattaaact |
169 |
Q |
| |
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|
| T |
8955944 |
gccaccatattttttccagcaaagtgcactagtaatgtattcttccaaggtgcacatcaagatttaact |
8956012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 246 - 499
Target Start/End: Complemental strand, 8995116 - 8994863
Alignment:
| Q |
246 |
catagtaaccttatcctttaagaaattttattatttttatatcannnnnnnnnggaa-caaacttataacatttcattagaaatcaaggtataactatat |
344 |
Q |
| |
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|||||||||||||||||||||||| ||||||| ||||||||| | || | |||||| |||||||||||||||||||||||||| || || || |
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| T |
8995116 |
catagtaaccttatcctttaagaatttttattttttttatataattttttcaggggagcaaactaataacatttcattagaaatcaaggtacaaatacat |
8995017 |
T |
|
| Q |
345 |
gacggtgcatcaataaacaagtgggagctagcataaaatgacgatatcttattcaagtctgagtgacccagtgacttaccatcgattaaactcgacatta |
444 |
Q |
| |
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|| ||| ||||||||||||||||| |||||||||||||||| |||| ||| ||| || || ||||| |||||| || || ||||| ||||||| | |
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| T |
8995016 |
gatggtacatcaataaacaagtggaagctagcataaaatgatgataccttcgctaagact-agcaacccactgacttgcctccgtttaaattcgacatga |
8994918 |
T |
|
| Q |
445 |
gagttttgaatattaacattaaacaattgttcacaaacattcataatactaccaa |
499 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
8994917 |
gagttttgaatattaacattaaacaacaattcacaaacattcataatactaccaa |
8994863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 246 - 499
Target Start/End: Complemental strand, 9019563 - 9019310
Alignment:
| Q |
246 |
catagtaaccttatcctttaagaaattttattatttttatatcannnnnnnnnggaa-caaacttataacatttcattagaaatcaaggtataactatat |
344 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||| | || | |||||| |||||||||||||||||||||||||| || || || |
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| T |
9019563 |
catagtaaccttatcctttaagaatttttattttttttatataattttttcaggggagcaaactaataacatttcattagaaatcaaggtacaaatacat |
9019464 |
T |
|
| Q |
345 |
gacggtgcatcaataaacaagtgggagctagcataaaatgacgatatcttattcaagtctgagtgacccagtgacttaccatcgattaaactcgacatta |
444 |
Q |
| |
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|| ||| ||||||||||||||||| |||||||||||||||| |||| ||| ||| || || ||||| |||||| || || ||||| ||||||| | |
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| T |
9019463 |
gatggtacatcaataaacaagtggaagctagcataaaatgatgataccttcgctaagact-agcaacccactgacttgcctccgtttaaattcgacatga |
9019365 |
T |
|
| Q |
445 |
gagttttgaatattaacattaaacaattgttcacaaacattcataatactaccaa |
499 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
9019364 |
gagttttgaatattaacattaaacaacaattcacaaacattcataatactaccaa |
9019310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 430 - 519
Target Start/End: Complemental strand, 8991389 - 8991300
Alignment:
| Q |
430 |
ttaaactcgacattagagttttgaatattaacattaaacaattgttcacaaacattcataatactaccaaatccagtaatatctctgctc |
519 |
Q |
| |
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||||||||||||| | ||||||||| | ||||||| || || | |||||||||||||||||| ||||||||| ||||||| ||||||||| |
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|
| T |
8991389 |
ttaaactcgacatgatagttttgaaaactaacattcaataactattcacaaacattcataatgctaccaaattcagtaatgtctctgctc |
8991300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 430 - 519
Target Start/End: Complemental strand, 9015836 - 9015747
Alignment:
| Q |
430 |
ttaaactcgacattagagttttgaatattaacattaaacaattgttcacaaacattcataatactaccaaatccagtaatatctctgctc |
519 |
Q |
| |
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||||||||||||| | ||||||||| | ||||||| || || | |||||||||||||||||| ||||||||| ||||||| ||||||||| |
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| T |
9015836 |
ttaaactcgacatgatagttttgaaaactaacattcaataactattcacaaacattcataatgctaccaaattcagtaatgtctctgctc |
9015747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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