View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12612_low_10 (Length: 293)
Name: NF12612_low_10
Description: NF12612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12612_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 8004731 - 8004454
Alignment:
| Q |
1 |
catcaaggtaataataagacccatcattcttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggtctcttctaaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8004731 |
catcaaggtaataataagacccagcattcttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggtctcttctaaa |
8004632 |
T |
|
| Q |
101 |
tgtgatatcaagatgctgcaacagtaattagattagacatatcatacgaacaagtaccaccagagagaacataattttttaattttaacgtgtgtgatac |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8004631 |
tgtgatatcaagatgctgcaacagtgattagattagacatatcatacgaacaagtaccaccagagagaacataattttttaattttaacgtgtgtgatac |
8004532 |
T |
|
| Q |
201 |
cctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaagattcatccc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8004531 |
cctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaaggttcatccc |
8004454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 51519024 - 51518878
Alignment:
| Q |
1 |
catcaaggtaataataagacccatcattcttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggtctcttctaaa |
100 |
Q |
| |
|
|||| |||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
51519024 |
catcgaggtaataataagagccagcattcttttgctctctgtcctttgttgattcaagtttgttgatccttgggcggaaattagttgggtctcttctaaa |
51518925 |
T |
|
| Q |
101 |
tgtgatatcaagatgctgcaacagtaattagattagacatatcatac |
147 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51518924 |
tgtgatatcaagatgctgcaacagtgattagattagacatatcatac |
51518878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 152 - 281
Target Start/End: Original strand, 7900522 - 7900654
Alignment:
| Q |
152 |
aagtaccaccagagagaaca---taattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaat |
248 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||| || ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7900522 |
aagtaccaccagagagaacaacataatttttaaattttaacatgcatgataccctaaatttttaaaaagggacgaattaatgaaaccattgaaaaacaat |
7900621 |
T |
|
| Q |
249 |
gacacttacagataagaaaagattcatcccagt |
281 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
7900622 |
gacacttacagataagaaaaggttcatcccagt |
7900654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 170 - 278
Target Start/End: Complemental strand, 51518882 - 51518774
Alignment:
| Q |
170 |
cataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaag |
269 |
Q |
| |
|
|||| ||||| ||||||||| | |||||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51518882 |
catactttttaaattttaactttcgtgataccctaaatttttaaaacggaatgaattaatgaaaccattgaaaaacaacgacacttacagataagaaaag |
51518783 |
T |
|
| Q |
270 |
attcatccc |
278 |
Q |
| |
|
|||||||| |
|
|
| T |
51518782 |
gttcatccc |
51518774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 1300128 - 1300401
Alignment:
| Q |
1 |
catcaaggtaataataagacccatcattcttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggtctcttctaaa |
100 |
Q |
| |
|
|||||||||||||||||| |||| || |||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
1300128 |
catcaaggtaataataagtcccagcaagcttttgctctctatccttggttgaatcaagtttgttgatccttgggcggaaattagttggatctcttctaaa |
1300227 |
T |
|
| Q |
101 |
tgtgatatcaagatgctgcaacagtaattagattagacatatcatacgaacaagtaccaccagag-agaacataattttttaattttaacgtgtgtgata |
199 |
Q |
| |
|
|||||||||||||||||||||| | |||| ||||||||| | ||| | |||||||||| |||| | |||||||||||| ||||||||| || ||||| |
|
|
| T |
1300228 |
tgtgatatcaagatgctgcaacgattattacattagacatttattacaagcaagtaccacgagagcaaaacataatttttaaattttaacatgcatgata |
1300327 |
T |
|
| Q |
200 |
c--cctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaagattcatcccagt |
281 |
Q |
| |
|
| | |||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
1300328 |
cttcaattatttttaaaa----------taacgaaaccattgaaaaacaatgacacttactgataagaaaaggttcatcccagt |
1300401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University