View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12612_low_2 (Length: 470)
Name: NF12612_low_2
Description: NF12612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12612_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 4 - 454
Target Start/End: Complemental strand, 28091377 - 28090928
Alignment:
| Q |
4 |
ggaggagcacagaccactacaagtgatgaaaaaacagtacccaaaagaagaaga-aaaaacgacgtaagtgcagttattatcagtaattatgtgtaagaa |
102 |
Q |
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|||| ||||| |||||||||||||| |||||||||| ||| ||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28091377 |
ggagaagcactgaccactacaagtgttgaaaaaacaatacacaa--gaagaaaagaaaaacgacgtaagtgcagttattatcagtaattatgtgtaagaa |
28091280 |
T |
|
| Q |
103 |
aatgtgtataaactgatacgatccataccagctgagcaggagcaggctcaaaataaattgctaatgcgtatgccatgccagtcacacagtatacaaggca |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28091279 |
aatgtgtataaactgatacgatccataccagctgagcaggagcaggctcaaaataaattgctaatgcgtatgccatgccagtcacacagtatacaaggca |
28091180 |
T |
|
| Q |
203 |
taccaaaaccgcataattactttcgaagcttgaccttggattgctaaaaaagtagaacatggataaataaatgagaggtttgacgattgtactgaaaaga |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28091179 |
taccaaaaccgcataattactttcgaagcttgaccttggattgctaaaaaagtagaacatggataaataaatgagaggtttgacgattgtactgaaaaga |
28091080 |
T |
|
| Q |
303 |
tcaattgtatctttggccaaaaaatgagctagactgctgatccctgatgcactctccctccagtattgtaatttatccatagaaaatgatctcagagctg |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28091079 |
tcaattgtatctttggccaaaaaatgagctagactgctgatccctgatgcactctccctccagtattgtaatttatccatagaaaatgatctcagagctg |
28090980 |
T |
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| Q |
403 |
caatcttgcaaagtagagctgcatatatgtaatatttatgagggaagaaatg |
454 |
Q |
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| T |
28090979 |
caatcttgcaaagtagagctgcatatatgtaatatttatgagggaagaaatg |
28090928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 42556033 - 42555989
Alignment:
| Q |
352 |
cactctccctccagtattgtaatttatccatagaaaatgatctca |
396 |
Q |
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| T |
42556033 |
cactctccctccagtagtgcagtttatccagagaaaatgatctca |
42555989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 128 - 431
Target Start/End: Original strand, 41040728 - 41041031
Alignment:
| Q |
128 |
taccagctgagcaggagcaggctcaaaataaattgctaatgcgtatgccatgccagtcacacagtatacaaggcataccaaaaccgcataattactttcg |
227 |
Q |
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|||||||||||||||| ||||| ||| | || |||||||| || ||||| ||||| |||||||| || | || |||||||| |||||| ||| | |
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| T |
41040728 |
taccagctgagcaggactaggctgaaagaagatggctaatgcataagccataccagtgacacagtacaccaaacaaaccaaaactatataattgcttcca |
41040827 |
T |
|
| Q |
228 |
aagcttgaccttggattgctaaaaaagtagaacatggataaataaatgagaggtttgacgattgtactgaaaagatcaattgtatctttggccaaaaaat |
327 |
Q |
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||| ||||||||||||| || ||||| ||||||||||| | ||||| | |||||||| |||||||||||||||||| ||||||||||| || | ||||| |
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| T |
41040828 |
aaggttgaccttggattacttaaaaaatagaacatggagagataaactacaggtttgatgattgtactgaaaagatcgattgtatctttcgctagaaaat |
41040927 |
T |
|
| Q |
328 |
gagctagactgctgatccctgatgcactctccctccagtattgtaatttatccatagaaaatgatctcagagctgcaatcttgcaaagtagagctgcata |
427 |
Q |
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| T |
41040928 |
gggctagactgcttatcccagctgcactttccctccagtattgtaacttatccgtagtaaacgatctaagtgctgcaatcttgcaaagtagagctgcaca |
41041027 |
T |
|
| Q |
428 |
tatg |
431 |
Q |
| |
|
|||| |
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|
| T |
41041028 |
tatg |
41041031 |
T |
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