View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12612_low_3 (Length: 465)
Name: NF12612_low_3
Description: NF12612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12612_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 27 - 234
Target Start/End: Original strand, 15872239 - 15872446
Alignment:
| Q |
27 |
atgtaataagtgatagccacacaatacaatgtggtaagatatttttgagataactaaaacttccatttcaaaaagaactaaccgtaagctcattcaacaa |
126 |
Q |
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| T |
15872239 |
atgtaataggtgatagccacacaatacaatgtggtaagatatttttgagataactaaaacttccattttaaaaagaactaactgtaagctcattcaacaa |
15872338 |
T |
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| Q |
127 |
tacttttgatcaagtaaatctcacatattatgaataaaatgaatgtttgaagctccaaacactttctgacatgcataattgacatgcataaaccctttcc |
226 |
Q |
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| T |
15872339 |
tacttttgatcaagtaagtctcacatattatgaataaaatgaatgtttgaagctccaaacactttctgacatgcataattgacatgcataaaccctttcc |
15872438 |
T |
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| Q |
227 |
ctatttcc |
234 |
Q |
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| T |
15872439 |
ctatttcc |
15872446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 303 - 380
Target Start/End: Original strand, 15872515 - 15872592
Alignment:
| Q |
303 |
gagatatttgtaaatgtatttgcaattttaatacaacaagagattaatatgacaacaaagtaaacatttagagattaa |
380 |
Q |
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| T |
15872515 |
gagatacttctagatgtatttgcaattttaatacaacaagagattaatatgacaacaaagtgaacatttagagattaa |
15872592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 385 - 465
Target Start/End: Original strand, 15874358 - 15874438
Alignment:
| Q |
385 |
accaccagagaattaaaaagctcaaatcaatgatacgtcttcgttctccaacatcaatgtattcttcaaactcattctctc |
465 |
Q |
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| T |
15874358 |
accactagaaaattaaaaagctcaactcaacaatacgtcttcgttctctaacatcaatgtattcttcaaactcattctctc |
15874438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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