View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12612_low_4 (Length: 454)

Name: NF12612_low_4
Description: NF12612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12612_low_4
NF12612_low_4
[»] chr4 (28 HSPs)
chr4 (17-454)||(23817732-23818174)
chr4 (403-454)||(3340861-3340912)
chr4 (403-454)||(4955368-4955419)
chr4 (403-454)||(16889587-16889638)
chr4 (403-454)||(25483390-25483441)
chr4 (403-454)||(31691206-31691257)
chr4 (403-454)||(34646700-34646751)
chr4 (403-454)||(36629291-36629342)
chr4 (403-453)||(49880214-49880264)
chr4 (406-454)||(15841419-15841467)
chr4 (403-454)||(32941174-32941225)
chr4 (403-454)||(39404072-39404123)
chr4 (403-454)||(50630806-50630857)
chr4 (315-373)||(23826898-23826956)
chr4 (403-447)||(52884941-52884985)
chr4 (406-454)||(54936253-54936301)
chr4 (403-454)||(39792911-39792962)
chr4 (403-454)||(41370411-41370462)
chr4 (403-454)||(44621056-44621107)
chr4 (403-454)||(45496859-45496910)
chr4 (407-454)||(49302964-49303011)
chr4 (403-450)||(51768115-51768162)
chr4 (403-454)||(54017646-54017697)
chr4 (403-454)||(55933175-55933226)
chr4 (403-452)||(3244504-3244553)
chr4 (168-201)||(19388933-19388966)
chr4 (403-452)||(22028014-22028063)
chr4 (405-454)||(36608712-36608761)
[»] chr8 (23 HSPs)
chr8 (403-454)||(3669741-3669792)
chr8 (403-454)||(18372047-18372098)
chr8 (403-454)||(34834930-34834981)
chr8 (403-454)||(70327-70378)
chr8 (403-454)||(9507836-9507887)
chr8 (403-454)||(33113420-33113471)
chr8 (403-454)||(34835263-34835314)
chr8 (403-454)||(34835529-34835580)
chr8 (403-454)||(34835795-34835846)
chr8 (403-450)||(45121967-45122014)
chr8 (410-454)||(5915928-5915972)
chr8 (403-454)||(3038343-3038394)
chr8 (403-454)||(5420705-5420756)
chr8 (403-454)||(9483240-9483291)
chr8 (403-454)||(20870626-20870677)
chr8 (403-454)||(30441139-30441190)
chr8 (403-454)||(45121709-45121760)
chr8 (403-454)||(45122678-45122729)
chr8 (400-454)||(9309030-9309084)
chr8 (167-196)||(30585122-30585151)
chr8 (174-211)||(41953172-41953209)
chr8 (404-448)||(11970297-11970341)
chr8 (403-447)||(25561876-25561920)
[»] chr3 (22 HSPs)
chr3 (403-454)||(37990692-37990743)
chr3 (403-454)||(42342143-42342194)
chr3 (403-454)||(21832396-21832447)
chr3 (403-454)||(15773246-15773297)
chr3 (403-454)||(22304623-22304674)
chr3 (403-454)||(32589757-32589808)
chr3 (403-454)||(43346844-43346895)
chr3 (403-452)||(41359820-41359869)
chr3 (402-454)||(45395706-45395758)
chr3 (403-454)||(1634367-1634418)
chr3 (403-454)||(4823709-4823760)
chr3 (403-454)||(12114615-12114666)
chr3 (403-454)||(15772908-15772959)
chr3 (407-454)||(22303712-22303759)
chr3 (403-454)||(29644955-29645006)
chr3 (403-454)||(32462953-32463004)
chr3 (403-454)||(37991030-37991081)
chr3 (403-454)||(39935008-39935059)
chr3 (403-454)||(52634994-52635045)
chr3 (403-454)||(54017869-54017920)
chr3 (404-454)||(25739478-25739528)
chr3 (398-454)||(8327953-8328009)
[»] chr7 (22 HSPs)
chr7 (403-454)||(30244324-30244375)
chr7 (403-454)||(45434690-45434741)
chr7 (403-454)||(1085669-1085720)
chr7 (403-454)||(6054614-6054665)
chr7 (403-454)||(7517634-7517685)
chr7 (403-454)||(7554079-7554130)
chr7 (403-454)||(19122785-19122836)
chr7 (403-454)||(22566715-22566766)
chr7 (403-454)||(22567092-22567143)
chr7 (403-454)||(30245131-30245182)
chr7 (403-454)||(30253546-30253597)
chr7 (403-450)||(37533067-37533114)
chr7 (167-201)||(43434523-43434557)
chr7 (405-454)||(1085301-1085350)
chr7 (403-454)||(23430-23481)
chr7 (403-454)||(16569250-16569301)
chr7 (403-454)||(16596361-16596412)
chr7 (403-454)||(34218087-34218138)
chr7 (403-454)||(37533417-37533468)
chr7 (403-454)||(45754769-45754820)
chr7 (412-454)||(9901706-9901748)
chr7 (405-454)||(118354-118403)
[»] chr6 (27 HSPs)
chr6 (403-454)||(3409313-3409364)
chr6 (403-454)||(6999849-6999900)
chr6 (403-454)||(10074416-10074467)
chr6 (403-454)||(16107732-16107783)
chr6 (403-454)||(32460633-32460684)
chr6 (403-450)||(593766-593813)
chr6 (403-454)||(1127414-1127465)
chr6 (403-454)||(2377808-2377859)
chr6 (403-454)||(2578888-2578939)
chr6 (403-454)||(3058280-3058331)
chr6 (403-454)||(10073669-10073720)
chr6 (403-452)||(2579927-2579976)
chr6 (403-452)||(12092537-12092586)
chr6 (403-454)||(2843608-2843660)
chr6 (402-454)||(26544102-26544154)
chr6 (403-454)||(2578496-2578547)
chr6 (403-450)||(2579549-2579596)
chr6 (403-450)||(10074048-10074095)
chr6 (403-454)||(10911620-10911671)
chr6 (403-454)||(14748391-14748442)
chr6 (403-454)||(29518557-29518608)
chr6 (403-454)||(29518974-29519025)
chr6 (403-454)||(32741233-32741284)
chr6 (403-454)||(35210258-35210309)
chr6 (404-454)||(3415513-3415563)
chr6 (169-201)||(1960345-1960377)
chr6 (168-196)||(34406440-34406468)
[»] chr2 (24 HSPs)
chr2 (403-454)||(6421439-6421490)
chr2 (403-454)||(28254290-28254341)
chr2 (403-454)||(14745720-14745771)
chr2 (403-454)||(15880317-15880368)
chr2 (403-454)||(33731702-33731753)
chr2 (403-450)||(36005937-36005984)
chr2 (403-454)||(36178658-36178709)
chr2 (403-454)||(41283528-41283579)
chr2 (410-454)||(31468803-31468847)
chr2 (403-454)||(3673122-3673173)
chr2 (403-454)||(5543051-5543102)
chr2 (403-454)||(28531367-28531418)
chr2 (403-454)||(29873590-29873641)
chr2 (403-454)||(33561504-33561555)
chr2 (403-454)||(36178322-36178373)
chr2 (403-454)||(37105978-37106029)
chr2 (403-454)||(37106242-37106293)
chr2 (403-454)||(38796673-38796724)
chr2 (403-452)||(7598282-7598331)
chr2 (421-454)||(30323536-30323569)
chr2 (420-453)||(35580494-35580527)
chr2 (404-444)||(12529091-12529131)
chr2 (406-454)||(14745347-14745395)
chr2 (402-454)||(15511548-15511600)
[»] scaffold0702 (1 HSPs)
scaffold0702 (403-454)||(567-618)
[»] chr5 (14 HSPs)
chr5 (403-454)||(11417030-11417081)
chr5 (403-454)||(18603173-18603224)
chr5 (403-454)||(26074666-26074717)
chr5 (403-454)||(26590963-26591014)
chr5 (403-454)||(33747825-33747876)
chr5 (403-454)||(41170688-41170739)
chr5 (404-454)||(32487448-32487498)
chr5 (403-454)||(6224250-6224301)
chr5 (403-454)||(9498707-9498758)
chr5 (403-454)||(15370153-15370204)
chr5 (403-454)||(25327989-25328040)
chr5 (403-450)||(26075219-26075266)
chr5 (403-454)||(40296368-40296419)
chr5 (167-195)||(27976386-27976414)
[»] chr1 (27 HSPs)
chr1 (403-454)||(3550774-3550825)
chr1 (403-454)||(17294631-17294682)
chr1 (403-454)||(26661575-26661626)
chr1 (403-454)||(32594769-32594820)
chr1 (403-454)||(40082461-40082511)
chr1 (403-454)||(41157045-41157096)
chr1 (403-454)||(44290511-44290562)
chr1 (403-452)||(3875386-3875435)
chr1 (403-454)||(66525-66576)
chr1 (403-454)||(5320018-5320069)
chr1 (403-454)||(11977334-11977385)
chr1 (403-454)||(22077163-22077214)
chr1 (403-454)||(22077548-22077599)
chr1 (403-454)||(24600367-24600418)
chr1 (168-199)||(27723845-27723876)
chr1 (403-454)||(29798253-29798304)
chr1 (403-454)||(34364561-34364612)
chr1 (403-454)||(34364979-34365030)
chr1 (403-454)||(38804408-38804459)
chr1 (403-454)||(41759537-41759588)
chr1 (403-450)||(44290882-44290929)
chr1 (398-450)||(1188645-1188697)
chr1 (167-211)||(3497235-3497279)
chr1 (172-200)||(27737006-27737034)
chr1 (167-207)||(40494258-40494298)
chr1 (403-443)||(41184152-41184192)
chr1 (167-199)||(50187309-50187341)
[»] scaffold0391 (1 HSPs)
scaffold0391 (403-454)||(1159-1210)
[»] scaffold0078 (1 HSPs)
scaffold0078 (398-454)||(5031-5087)


Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 17 - 454
Target Start/End: Complemental strand, 23818174 - 23817732
Alignment:
Q  17 aagattaaaaagcaaggaggagaggtgaagaactatgttcatatgtagggaacttgtatgggcatagtgtggtggtccacacaagaaagatttatgaagc 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||    
T  23818174 aagattaaaaagcaaggaggagaggtgaagaactatgtttatatgtagggaacttgtatggacatagtgtggtggtccacgtaagaaagatttatgaagc 23818075  T
Q  117 accgatatggacatcagacacgaaattagaa-------ttaacacatgtacacacaaaataatttaagaaaatgaaagtgattgaatataataacatgtg 209  Q
    || ||||||||||||||||||||||||||||       ||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  23818074 actgatatggacatcagacacgaaattagaaattagaattaacacgtgtacacacaa--taatttaagaaaatgaaagtgattgaatataataacatgtg 23817977  T
Q  210 tctttttgtattggcattgtatatcaatatgtatcgaacaccttacacaccttagtgtcgcagcatagagcaagactgtatcaaaagaagagtatagttg 309  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23817976 tcgttttgtattggcattgtatatcaatatgtatcgaacaccttacacaccttagtgtcgcagcatagagcaagactgtatcaaaagaagagtatagttg 23817877  T
Q  310 ttttcaaaaggttgagctacttgactaaaaagttaagctaaaaaagtttggatggattagtaaatgttgttgtgtgcaagtgtgatttatatgttataag 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23817876 ttttcaaaaggttgagctacttgactaaaaagttaagctaaaaaagtttggatggattagtaaatgttgttgtgtgcaagtgtgagttatatgttataag 23817777  T
Q  410 taagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  23817776 taagaggattcataaactcattgccttaaggttttgggtaagagt 23817732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 3340861 - 3340912
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| |||||||||||||||||||||||||||    
T  3340861 ttataagtaagaggacccataaacccactgccttaaggttttgggtaagagt 3340912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 4955419 - 4955368
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||| |||||||| || ||||||||||||||||||||||||    
T  4955419 ttataagtaagaggactcataaacccattgccttaaggttttgggtaagagt 4955368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 16889638 - 16889587
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||||    
T  16889638 ttataagtaagaggattcataaacctactgccttaaagttttgggtaagagt 16889587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 25483390 - 25483441
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||| ||||||| || ||||||||||||||||||||||||    
T  25483390 ttataagtaagaggatccataaacccattgccttaaggttttgggtaagagt 25483441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 31691206 - 31691257
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  31691206 ttataagtaagaggacccataaactcattgccttaaggttttgggtaagagt 31691257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 34646751 - 34646700
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||| |||||||| ||||||||||| ||||||||||||||||||||||||    
T  34646751 ttataactaagaggactcataaactcattgccttaaggttttgggtaagagt 34646700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 36629291 - 36629342
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  36629291 ttataagtaagaggacccataaactcattgccttaaggttttgggtaagagt 36629342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 49880214 - 49880264
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagag 453  Q
    |||||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  49880214 ttataagtaagaggacccataaacccactgccttaaggttttgggtaagag 49880264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 454
Target Start/End: Complemental strand, 15841467 - 15841419
Alignment:
Q  406 taagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||| ||||||||||||||| || ||||||||||||||||||||||||    
T  15841467 taagtgagaggattcataaacacattgccttaaggttttgggtaagagt 15841419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 32941225 - 32941174
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||| |||||||  ||||||||||| ||||||||||||||||||||||||    
T  32941225 ttataaataagagggctcataaactcattgccttaaggttttgggtaagagt 32941174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 39404072 - 39404123
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||| |||||||||||  || ||||||||||||||||||||    
T  39404072 ttataagtaagaggactcataaactcatagcattaaggttttgggtaagagt 39404123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 50630857 - 50630806
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  50630857 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagt 50630806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 23826956 - 23826898
Alignment:
Q  315 aaaaggttgagctacttgactaaaaagttaagctaaaaaagtttggatggattagtaaa 373  Q
    |||| ||||||| ||| ||||||||  |||||||| |||||||||||||||||||||||    
T  23826956 aaaaagttgagcaactagactaaaagcttaagctataaaagtttggatggattagtaaa 23826898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 52884941 - 52884985
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttggg 447  Q
    |||||||||||||||| ||||||| || |||||||||||||||||    
T  52884941 ttataagtaagaggatccataaacccattgccttaaggttttggg 52884985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 454
Target Start/End: Original strand, 54936253 - 54936301
Alignment:
Q  406 taagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  54936253 taagtaagaggacccataaacccattgccttaaggttttgggtaagagt 54936301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 39792962 - 39792911
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||| |||||||  | |||||||| ||||||||||||||||||||||||    
T  39792962 ttataagaaagaggaaccgtaaactcattgccttaaggttttgggtaagagt 39792911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 41370411 - 41370462
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || |||||||| |||||||||||||||    
T  41370411 ttataagtaagaggacccataaacccattgccttaaagttttgggtaagagt 41370462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 44621056 - 44621107
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||   |||||||||| || |||||||||||||||||||||    
T  44621056 ttataagtaagagggcacataaactcattgtcttaaggttttgggtaagagt 44621107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 45496859 - 45496910
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||   ||||||||| || |||||||||||||||||||||    
T  45496859 ttataagtaagaggacctataaactcattgtcttaaggttttgggtaagagt 45496910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 454
Target Start/End: Original strand, 49302964 - 49303011
Alignment:
Q  407 aagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||  ||||||| || ||||||||||||||||||||||||    
T  49302964 aagtaagaggacccataaacccattgccttaaggttttgggtaagagt 49303011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 450
Target Start/End: Complemental strand, 51768162 - 51768115
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaa 450  Q
    |||||| |||||||| ||||||||||| || |||||||||||||||||    
T  51768162 ttataaataagaggactcataaactcattgtcttaaggttttgggtaa 51768115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 54017697 - 54017646
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || |||||||||||||| |||||||||    
T  54017697 ttataagtaagaggacccataaacccattgccttaaggttttaggtaagagt 54017646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 55933226 - 55933175
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || |||||||| |||||||||||||||    
T  55933226 ttataagtaagaggacccataaacccattgccttaaagttttgggtaagagt 55933175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 3244553 - 3244504
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaaga 452  Q
    |||||||||||||||  |||||||||| || ||||| |||||||||||||    
T  3244553 ttataagtaagaggacccataaactcattgtcttaaagttttgggtaaga 3244504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 19388933 - 19388966
Alignment:
Q  168 ataatttaagaaaatgaaagtgattgaatataat 201  Q
    |||||||||| |||||||||||||||||||||||    
T  19388933 ataatttaaggaaatgaaagtgattgaatataat 19388966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 22028063 - 22028014
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaaga 452  Q
    |||||||||||||||  |||||||  | ||||||||||||||||||||||    
T  22028063 ttataagtaagaggacccataaacatattgccttaaggttttgggtaaga 22028014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 36608761 - 36608712
Alignment:
Q  405 ataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||| ||||||  || || |||||||||||||||||||||    
T  36608761 ataagtaagaggatccataaatccattgtcttaaggttttgggtaagagt 36608712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 3669741 - 3669792
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  3669741 ttataagtaagaggactcataaactcattgccttaaggttttgggtaagagt 3669792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 18372098 - 18372047
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||| |||||||||| ||| ||||||||||||||||||||    
T  18372098 ttataagtaagaggatccataaactcattgctttaaggttttgggtaagagt 18372047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 34834930 - 34834981
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||| || ||||||||||| ||||||||||||||||||||||||    
T  34834930 ttataagtaagatgactcataaactcattgccttaaggttttgggtaagagt 34834981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 70378 - 70327
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| ||||||||||||||||| |||||||||    
T  70378 ttataagtaagaggacccataaacccactgccttaaggttttaggtaagagt 70327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 9507836 - 9507887
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||| |||||||| || | ||||||||||||||||||||||    
T  9507836 ttataagtaagaggactcataaacccattaccttaaggttttgggtaagagt 9507887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 33113471 - 33113420
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||||| ||||||||| ||||||||||||||    
T  33113471 ttataagtaagaggacccataaactcattgccttaagattttgggtaagagt 33113420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 34835263 - 34835314
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||||| |||||||| |||||||||||||||    
T  34835263 ttataagtaagaggacccataaactcattgccttaaagttttgggtaagagt 34835314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 34835529 - 34835580
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||||| |||||||| |||||||||||||||    
T  34835529 ttataagtaagaggacccataaactcattgccttaaagttttgggtaagagt 34835580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 34835795 - 34835846
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||||| |||||||| |||||||||||||||    
T  34835795 ttataagtaagaggacccataaactcattgccttaaagttttgggtaagagt 34835846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 450
Target Start/End: Complemental strand, 45122014 - 45121967
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaa 450  Q
    ||||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  45122014 ttataagtaagaggactcataaactcattgccttaagattttgggtaa 45121967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 454
Target Start/End: Original strand, 5915928 - 5915972
Alignment:
Q  410 taagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||    
T  5915928 taagaggacccataaactcattgccttaaggttttgggtaagagt 5915972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 3038394 - 3038343
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||| ||||  ||||||| || ||||||||||||||||||||||||    
T  3038394 ttataagtaaaaggacccataaacccattgccttaaggttttgggtaagagt 3038343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 5420705 - 5420756
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||| |||||||| || ||||||||||||||  ||||||||    
T  5420705 ttataagtaagaggactcataaacccattgccttaaggttttttgtaagagt 5420756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 9483291 - 9483240
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || || |||||||||||||||||||||    
T  9483291 ttataagtaagaggacccataaacccattgtcttaaggttttgggtaagagt 9483240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 20870677 - 20870626
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| |||||||||||| |||||| |||||||    
T  20870677 ttataagtaagaggacccataaacccactgccttaagattttggataagagt 20870626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 30441139 - 30441190
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||   ||||||| || ||||||||||||||||||||||||    
T  30441139 ttataagtaagagggcccataaacccattgccttaaggttttgggtaagagt 30441190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 45121760 - 45121709
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||| |||||||  || |||||||||||||| ||||||||    
T  45121760 ttataagtaagaggatccataaacctacagccttaaggttttgagtaagagt 45121709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 45122678 - 45122729
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||||| || |||||||||||||||| ||||    
T  45122678 ttataagtaagaggacccataaactcattgtcttaaggttttgggtatgagt 45122729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 454
Target Start/End: Original strand, 9309030 - 9309084
Alignment:
Q  400 atgttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||||||  ||||||| || ||||| ||||||||||| ||||||    
T  9309030 atgttataagtaagaggacccataaacccattgcctaaaggttttgggcaagagt 9309084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 30585151 - 30585122
Alignment:
Q  167 aataatttaagaaaatgaaagtgattgaat 196  Q
    ||||||||||||||||||||||||||||||    
T  30585151 aataatttaagaaaatgaaagtgattgaat 30585122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 41953209 - 41953172
Alignment:
Q  174 taagaaaatgaaagtgattgaatataataacatgtgtc 211  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  41953209 taagaaaatgaaagtgattgaatgtaatcacatgtgtc 41953172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 448
Target Start/End: Original strand, 11970297 - 11970341
Alignment:
Q  404 tataagtaagaggattcataaactcactgccttaaggttttgggt 448  Q
    ||||||||||| |||||||||||||| |||||| || ||||||||    
T  11970297 tataagtaagatgattcataaactcaatgcctttagattttgggt 11970341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 25561920 - 25561876
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttggg 447  Q
    |||||||||||||||  |||||||||| || ||||||||||||||    
T  25561920 ttataagtaagaggacccataaactcattgtcttaaggttttggg 25561876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 37990743 - 37990692
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  37990743 ttataagtaagaggactcataaactcattgccttaaggttttgggtaagagt 37990692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 42342194 - 42342143
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  42342194 ttataagtaagaggactcataaactcattgccttaaggttttgggtaagagt 42342143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 21832447 - 21832396
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  21832447 ttataagtaagaggactcataaactcatagccttaaggttttgggtaagagt 21832396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 15773246 - 15773297
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||| |||||| |||| |||||||| |||||||||||||||    
T  15773246 ttataagtaagaggactcataagctcattgccttaaagttttgggtaagagt 15773297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 22304623 - 22304674
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  22304623 ttataagtaagaggacccataaacacattgccttaaggttttgggtaagagt 22304674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 32589757 - 32589808
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  32589757 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagt 32589808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 43346895 - 43346844
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||| |  |||||||||| ||||||||||||||||||||||||    
T  43346895 ttataagtaagagaacccataaactcattgccttaaggttttgggtaagagt 43346844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 41359869 - 41359820
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaaga 452  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||    
T  41359869 ttataagtaagaggacccataaacccattgccttaaggttttgggtaaga 41359820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 45395758 - 45395706
Alignment:
Q  402 gttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||||| ||||||| || || ||||| |||||||||||||||    
T  45395758 gttataagtaagaggatccataaacccattgtcttaatgttttgggtaagagt 45395706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 1634418 - 1634367
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || || |||||||||||||||||||||    
T  1634418 ttataagtaagaggacccataaacccattggcttaaggttttgggtaagagt 1634367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 4823709 - 4823760
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||| |||||  |||||||||| ||||||||| ||||||||||||||    
T  4823709 ttataagtaggaggacccataaactcattgccttaagattttgggtaagagt 4823760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 12114666 - 12114615
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || || |||||||||||||||||||||    
T  12114666 ttataagtaagaggacccataaacccattgtcttaaggttttgggtaagagt 12114615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 15772908 - 15772959
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||||| ||| |||||||||||| |||||||    
T  15772908 ttataagtaagaggacccataaactcattgctttaaggttttggataagagt 15772959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 454
Target Start/End: Complemental strand, 22303759 - 22303712
Alignment:
Q  407 aagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||  ||||||| || ||||||||||||||||||||||||    
T  22303759 aagtaagaggacccataaacccattgccttaaggttttgggtaagagt 22303712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 29645006 - 29644955
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || || |||||||||||||||||||||    
T  29645006 ttataagtaagaggacccataaacccattgtcttaaggttttgggtaagagt 29644955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 32463004 - 32462953
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||| || |||||||| || ||||||||||||||| ||||||||    
T  32463004 ttataagtaagaagactcataaacccattgccttaaggttttgagtaagagt 32462953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 37991081 - 37991030
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||   |||||||||  |||||||||||||||||||||||    
T  37991081 ttataagtaagaggacctataaactcatcgccttaaggttttgggtaagagt 37991030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 39935059 - 39935008
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||| ||||||| || |||||||| |||||| ||||||||    
T  39935059 ttataagtaagaggatccataaacccattgccttaaagttttgagtaagagt 39935008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 52634994 - 52635045
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||| ||||||||  |||||||||| ||||||||| ||||||||||||||    
T  52634994 ttataaataagaggacccataaactcattgccttaagattttgggtaagagt 52635045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 54017920 - 54017869
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||| ||||||||  |  |||||||||||||||||||||||    
T  54017920 ttataagtaagaggactcataaacctaacgccttaaggttttgggtaagagt 54017869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 25739528 - 25739478
Alignment:
Q  404 tataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||  |||||||||| ||| || |||||||||||||||||    
T  25739528 tataagtaagaggacccataaactcattgcttttaggttttgggtaagagt 25739478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 454
Target Start/End: Original strand, 8327953 - 8328009
Alignment:
Q  398 atatgttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||| ||||||||||||| |  |||||||  | ||||||||||||||||||||||||    
T  8327953 atatcttataagtaagagaacccataaacgtaatgccttaaggttttgggtaagagt 8328009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 30244324 - 30244375
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||| |||||||| || ||||||||||||||||||||||||    
T  30244324 ttataagtaagaggactcataaacccattgccttaaggttttgggtaagagt 30244375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 45434690 - 45434741
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  45434690 ttataagtaagaggacccataaacttactgccttaaggttttgggtaagagt 45434741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 1085720 - 1085669
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  1085720 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagt 1085669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 6054614 - 6054665
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  6054614 ttataagtaagaggacccataaacacattgccttaaggttttgggtaagagt 6054665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 7517634 - 7517685
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  7517634 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagt 7517685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 7554079 - 7554130
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||| ||||||| ||  |||||||||||||||||||||||    
T  7554079 ttataagtaagaggatccataaacccatagccttaaggttttgggtaagagt 7554130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 19122785 - 19122836
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||| |||||||  || ||||||||||||||||||||||||    
T  19122785 ttataagtaagaggactcataaatccattgccttaaggttttgggtaagagt 19122836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 22566766 - 22566715
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  22566766 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagt 22566715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 22567143 - 22567092
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||||| |||||||||||||| |||||||||    
T  22567143 ttataagtaagaggacccataaactcattgccttaaggtttttggtaagagt 22567092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 30245131 - 30245182
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||| ||  |||||||||| ||||||||||||||||||||||||    
T  30245131 ttataagtaagacgacccataaactcattgccttaaggttttgggtaagagt 30245182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 30253546 - 30253597
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||| |  |||||||||| ||||||||||||||||||||||||    
T  30253546 ttataagtaagagaacccataaactcattgccttaaggttttgggtaagagt 30253597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 450
Target Start/End: Complemental strand, 37533114 - 37533067
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaa 450  Q
    |||||||||||||||  |||||||||| ||||||||||||||||||||    
T  37533114 ttataagtaagaggacccataaactcattgccttaaggttttgggtaa 37533067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 43434523 - 43434557
Alignment:
Q  167 aataatttaagaaaatgaaagtgattgaatataat 201  Q
    |||||||||||||||||||||||||||||||||||    
T  43434523 aataatttaagaaaatgaaagtgattgaatataat 43434557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 1085350 - 1085301
Alignment:
Q  405 ataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||| |  |||||||||| ||||||||||||||||||||||||    
T  1085350 ataagtaagagaacccataaactcattgccttaaggttttgggtaagagt 1085301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 23481 - 23430
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||  | ||||||||||||||||||||||||    
T  23481 ttataagtaagaggacccataaacctattgccttaaggttttgggtaagagt 23430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 16569250 - 16569301
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || |||||||||||||| |||||||||    
T  16569250 ttataagtaagaggacccataaacccattgccttaaggtttttggtaagagt 16569301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 16596412 - 16596361
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || |||||||||||||| |||||||||    
T  16596412 ttataagtaagaggacccataaacccattgccttaaggtttttggtaagagt 16596361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 34218138 - 34218087
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||| |||||| |||||||| || || |||||||||||||||||||||    
T  34218138 ttataagtgagaggactcataaacccattgtcttaaggttttgggtaagagt 34218087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 37533468 - 37533417
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||  || ||||||||||||||||||||||||    
T  37533468 ttataagtaagaggacccataaatccattgccttaaggttttgggtaagagt 37533417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 45754769 - 45754820
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||| || |||||||| ||  |||||||||||||||||||||||    
T  45754769 ttataagtaagatgactcataaacccatagccttaaggttttgggtaagagt 45754820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 454
Target Start/End: Original strand, 9901706 - 9901748
Alignment:
Q  412 agaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||| |||||||||| || |||||||||||||||||||||    
T  9901706 agaggatccataaactcattgtcttaaggttttgggtaagagt 9901748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 118403 - 118354
Alignment:
Q  405 ataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||| ||||||| || | || |||||||||||||||||||    
T  118403 ataagtaagaggatccataaacccattaccgtaaggttttgggtaagagt 118354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 3409313 - 3409364
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  3409313 ttataagtaagaggacccataaactcattgccttaaggttttgggtaagagt 3409364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 6999900 - 6999849
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| |||||||    
T  6999900 ttatatgtaagaggatccataaactcactgccttaaggttttggataagagt 6999849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 10074467 - 10074416
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  10074467 ttataagtaagaggacccataaactcattgccttaaggttttgggtaagagt 10074416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 16107732 - 16107783
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||| |||||||| || ||||||||||||||||||||||||    
T  16107732 ttataagtaagaggactcataaacccattgccttaaggttttgggtaagagt 16107783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 32460684 - 32460633
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||| |||||||| || ||||||||||||||||||||||||    
T  32460684 ttataagtaagaggactcataaacccattgccttaaggttttgggtaagagt 32460633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 450
Target Start/End: Complemental strand, 593813 - 593766
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaa 450  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  593813 ttataagtaagaggactcataaaccgactgccttaaggttttgggtaa 593766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 1127414 - 1127465
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||| |||||||| || | ||||||||||||||||||||||    
T  1127414 ttataagtaagaggactcataaacccattaccttaaggttttgggtaagagt 1127465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 2377808 - 2377859
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  2377808 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagt 2377859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 2578939 - 2578888
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||| ||||||||| |||||||||| | ||||||||||||||||||||||    
T  2578939 ttataaataagaggatccataaactcattaccttaaggttttgggtaagagt 2578888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 3058280 - 3058331
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||| |||||| ||||||| || ||||||||||||||||||||||||    
T  3058280 ttataagtatgaggatccataaacccattgccttaaggttttgggtaagagt 3058331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 10073720 - 10073669
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||| |||||||||| || |||||| ||||||||||||||    
T  10073720 ttataagtaagaggatccataaactcattggcttaagattttgggtaagagt 10073669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 2579976 - 2579927
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaaga 452  Q
    |||||||||||||||  ||||||| ||| |||||||||||||||||||||    
T  2579976 ttataagtaagaggacccataaacccacagccttaaggttttgggtaaga 2579927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 12092586 - 12092537
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaaga 452  Q
    |||||||| ||||||| |||||||||| ||||||||||||||| ||||||    
T  12092586 ttataagtgagaggatccataaactcattgccttaaggttttgagtaaga 12092537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 2843608 - 2843660
Alignment:
Q  403 ttataagtaagaggattc-ataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  | ||||||||| ||||||||||||||||||||||||    
T  2843608 ttataagtaagaggaccccataaactcattgccttaaggttttgggtaagagt 2843660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 454
Target Start/End: Original strand, 26544102 - 26544154
Alignment:
Q  402 gttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||||  ||||||| ||| |||||||||||||| ||||||||    
T  26544102 gttataagtaagaggacccataaacccaccgccttaaggttttgagtaagagt 26544154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 2578547 - 2578496
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| ||  |||||||||||||||||||||||    
T  2578547 ttataagtaagaggacccataaacccatagccttaaggttttgggtaagagt 2578496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 450
Target Start/End: Complemental strand, 2579596 - 2579549
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaa 450  Q
    ||||||||||||||   |||||||||| ||||||||||||||||||||    
T  2579596 ttataagtaagagggcccataaactcattgccttaaggttttgggtaa 2579549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 450
Target Start/End: Complemental strand, 10074095 - 10074048
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaa 450  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||    
T  10074095 ttataagtaagaggacccataaacccattgccttaaggttttgggtaa 10074048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 10911620 - 10911671
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||  |||||||    
T  10911620 ttataagtaagaggactcataaactcattgccttaaagttttgaataagagt 10911671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 14748442 - 14748391
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||| ||||||||  |||||||||| ||| ||||||||||||||||||||    
T  14748442 ttataaataagaggacccataaactcattgcgttaaggttttgggtaagagt 14748391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 29518557 - 29518608
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || | ||||||||||||||||||||||    
T  29518557 ttataagtaagaggacccataaacccattaccttaaggttttgggtaagagt 29518608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 29518974 - 29519025
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || | ||||||||||||||||||||||    
T  29518974 ttataagtaagaggacccataaacccattaccttaaggttttgggtaagagt 29519025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 32741233 - 32741284
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || | ||||||||||||||||||||||    
T  32741233 ttataagtaagaggacccataaacccattaccttaaggttttgggtaagagt 32741284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 35210258 - 35210309
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||  || ||||||||||||||||||||||||    
T  35210258 ttataagtaagaggacccataaaaccattgccttaaggttttgggtaagagt 35210309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 3415513 - 3415563
Alignment:
Q  404 tataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||  ||||||| || |||||||||||||| |||||||||    
T  3415513 tataagtaagaggacccataaacccattgccttaaggtttttggtaagagt 3415563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 1960377 - 1960345
Alignment:
Q  169 taatttaagaaaatgaaagtgattgaatataat 201  Q
    |||||||||||||||||||||||||||| ||||    
T  1960377 taatttaagaaaatgaaagtgattgaatgtaat 1960345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 196
Target Start/End: Original strand, 34406440 - 34406468
Alignment:
Q  168 ataatttaagaaaatgaaagtgattgaat 196  Q
    |||||||||||||||||||||||||||||    
T  34406440 ataatttaagaaaatgaaagtgattgaat 34406468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 6421439 - 6421490
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||| ||||||||||| |||||| |||||||||||||||||    
T  6421439 ttataagtaagaggactcataaactcattgccttgaggttttgggtaagagt 6421490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 28254341 - 28254290
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  28254341 ttataagtaagaggacccataaactcattgccttaaggttttgggtaagagt 28254290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 14745771 - 14745720
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  14745771 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagt 14745720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 15880317 - 15880368
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  15880317 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagt 15880368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 33731702 - 33731753
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||| |||||||  | ||||||||||||||||||||||||    
T  33731702 ttataagtaagaggatccataaacctattgccttaaggttttgggtaagagt 33731753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 450
Target Start/End: Complemental strand, 36005984 - 36005937
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaa 450  Q
    |||||||||||||||  |||||||||| ||||||||||||||||||||    
T  36005984 ttataagtaagaggacccataaactcattgccttaaggttttgggtaa 36005937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 36178709 - 36178658
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  36178709 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagt 36178658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 41283579 - 41283528
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||||| |||||||||||||| |||||||||    
T  41283579 ttataagtaagaggacccataaactcattgccttaaggttttaggtaagagt 41283528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 454
Target Start/End: Complemental strand, 31468847 - 31468803
Alignment:
Q  410 taagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||    
T  31468847 taagaggacccataaactcattgccttaaggttttgggtaagagt 31468803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 3673122 - 3673173
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||| |||||||||| ||| ||||| |||||| |||||||    
T  3673122 ttataagtaagaggatccataaactcattgctttaagattttggctaagagt 3673173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 5543102 - 5543051
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||| |||||||  | ||||||||| ||||||||||||||    
T  5543102 ttataagtaagaggatccataaacctattgccttaagattttgggtaagagt 5543051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 28531418 - 28531367
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||   |||||||||| ||||||||| ||||||||||||||    
T  28531418 ttataagtaagaggtcccataaactcattgccttaagattttgggtaagagt 28531367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 29873641 - 29873590
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||  ||||| ||||||||||| ||||||||||||||| ||||||||    
T  29873641 ttataagtgggaggactcataaactcattgccttaaggttttgagtaagagt 29873590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 33561555 - 33561504
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||| ||||||  |||||||||| || |||||||||||||||||||||    
T  33561555 ttataagtgagaggacccataaactcattgtcttaaggttttgggtaagagt 33561504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 36178373 - 36178322
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||| ||| |||||||| || || |||||||||||||||||||||    
T  36178373 ttataagtaaggggactcataaacccattgtcttaaggttttgggtaagagt 36178322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 37105978 - 37106029
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||| |||  |||||||||| ||||||||| ||||||||||||||    
T  37105978 ttataagtaaggggacccataaactcattgccttaagattttgggtaagagt 37106029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 37106242 - 37106293
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || | ||||||||||||||||||||||    
T  37106242 ttataagtaagaggacccataaacccatttccttaaggttttgggtaagagt 37106293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 38796724 - 38796673
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||  | ||||||||||||||||||||||||    
T  38796724 ttataagtaagaggacccataaacctaatgccttaaggttttgggtaagagt 38796673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 452
Target Start/End: Original strand, 7598282 - 7598331
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaaga 452  Q
    |||||| ||||||||  ||||||||||  |||||||||||||||||||||    
T  7598282 ttataaataagaggacccataaactcatagccttaaggttttgggtaaga 7598331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 454
Target Start/End: Original strand, 30323536 - 30323569
Alignment:
Q  421 ataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||| ||||||||||||||||||||||||    
T  30323536 ataaactcattgccttaaggttttgggtaagagt 30323569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 453
Target Start/End: Complemental strand, 35580527 - 35580494
Alignment:
Q  420 cataaactcactgccttaaggttttgggtaagag 453  Q
    |||||||||| |||||||||||||||||||||||    
T  35580527 cataaactcattgccttaaggttttgggtaagag 35580494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 444
Target Start/End: Complemental strand, 12529131 - 12529091
Alignment:
Q  404 tataagtaagaggattcataaactcactgccttaaggtttt 444  Q
    |||||||||||||| ||||||||||| |||||||| |||||    
T  12529131 tataagtaagaggactcataaactcattgccttaaagtttt 12529091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 454
Target Start/End: Complemental strand, 14745395 - 14745347
Alignment:
Q  406 taagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||| |||||  ||||||| || ||||||||||||||||||||||||    
T  14745395 taagtatgaggacccataaacccattgccttaaggttttgggtaagagt 14745347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 15511600 - 15511548
Alignment:
Q  402 gttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||||  ||||||| || || |||||| ||||||||||||||    
T  15511600 gttataagtaagaggacccataaacccattgtcttaagattttgggtaagagt 15511548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 618 - 567
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  618 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagt 567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 11417081 - 11417030
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||| ||||||| || ||||||||||||||| ||||||||    
T  11417081 ttataagtaagaggatccataaacccattgccttaaggttttgtgtaagagt 11417030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 18603224 - 18603173
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  18603224 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagt 18603173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 26074666 - 26074717
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  26074666 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagt 26074717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 26591014 - 26590963
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||| |||||| ||| ||||||||||||||| ||||||||    
T  26591014 ttataagtaagaggatccataaattcaatgccttaaggttttgagtaagagt 26590963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 33747825 - 33747876
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||| |||||||||| ||||||||| |||||| |||||||    
T  33747825 ttataagtaagaggatccataaactcattgccttaagattttggataagagt 33747876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 41170688 - 41170739
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  41170688 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagt 41170739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 32487448 - 32487498
Alignment:
Q  404 tataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  32487448 tataagtaagaggacccataaacccattgccttaaggttttgggtaagagt 32487498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 6224250 - 6224301
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||||||  ||||||||||||| |||||||||    
T  6224250 ttataagtaagaggacccataaactcatcgccttaaggtttttggtaagagt 6224301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 9498758 - 9498707
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || ||||||||| ||||||||||||||    
T  9498758 ttataagtaagaggacccataaacccattgccttaagattttgggtaagagt 9498707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 15370153 - 15370204
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||  ||| |||||||||||||||||||||||    
T  15370153 ttataagtaagaggacccataaatccacagccttaaggttttgggtaagagt 15370204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 25327989 - 25328040
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||  | ||||||||||||||||||||||||    
T  25327989 ttataagtaagaggacccataaacctaatgccttaaggttttgggtaagagt 25328040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 450
Target Start/End: Complemental strand, 26075266 - 26075219
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaa 450  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||    
T  26075266 ttataagtaagaggacccataaacccattgccttaaggttttgggtaa 26075219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 40296419 - 40296368
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || |||||| |||||||||||||||||    
T  40296419 ttataagtaagaggacccataaacccattgccttgaggttttgggtaagagt 40296368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 27976386 - 27976414
Alignment:
Q  167 aataatttaagaaaatgaaagtgattgaa 195  Q
    |||||||||||||||||||||||||||||    
T  27976386 aataatttaagaaaatgaaagtgattgaa 27976414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 3550774 - 3550825
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||| |||||||| || |||||||| |||||||||||||||    
T  3550774 ttataagtaagaggactcataaacccattgccttaaagttttgggtaagagt 3550825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 17294631 - 17294682
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  17294631 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagt 17294682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 26661626 - 26661575
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||| ||||||  |||||||||| ||||||||||||||||||||||||    
T  26661626 ttataagtgagaggacccataaactcattgccttaaggttttgggtaagagt 26661575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 32594820 - 32594769
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||||| || |||||||||||||||||||||    
T  32594820 ttataagtaagaggacccataaactcattgtcttaaggttttgggtaagagt 32594769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 40082461 - 40082511
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||| |||||| ||| ||||||||||||||||||||||||    
T  40082461 ttataagtaagaggat-cataaattcattgccttaaggttttgggtaagagt 40082511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 41157045 - 41157096
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||||| ||| ||||||||||||||||||||    
T  41157045 ttataagtaagaggacccataaactcattgctttaaggttttgggtaagagt 41157096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 44290562 - 44290511
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  44290562 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagt 44290511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 3875435 - 3875386
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaaga 452  Q
    ||||||||||||||| |||||||| || |||||||||||||| |||||||    
T  3875435 ttataagtaagaggactcataaacccattgccttaaggttttaggtaaga 3875386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 66576 - 66525
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||| |||||||  |  |||||||||||||||||||||||    
T  66576 ttataagtaagaggatccataaacatatggccttaaggttttgggtaagagt 66525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 5320069 - 5320018
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||| ||||||  ||||||||||  |||||||||||||||||||||||    
T  5320069 ttataagtgagaggacccataaactcatagccttaaggttttgggtaagagt 5320018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 11977334 - 11977385
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||| | ||||||||  | ||||||||||||||||||||||||    
T  11977334 ttataagtaagagcactcataaacctaatgccttaaggttttgggtaagagt 11977385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 22077214 - 22077163
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||||| |||| ||||||||||| |||||||    
T  22077214 ttataagtaagaggacccataaactcattgccctaaggttttggataagagt 22077163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 22077599 - 22077548
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  |||||||||   |||||||||||||||||||||||    
T  22077599 ttataagtaagaggacccataaactcgtagccttaaggttttgggtaagagt 22077548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 24600418 - 24600367
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||| | ||||||||||| || |||||||||||| ||||||||    
T  24600418 ttataagtaagagaactcataaactcattgtcttaaggttttgtgtaagagt 24600367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 199
Target Start/End: Original strand, 27723845 - 27723876
Alignment:
Q  168 ataatttaagaaaatgaaagtgattgaatata 199  Q
    ||||||||||||||||||||||||||||||||    
T  27723845 ataatttaagaaaatgaaagtgattgaatata 27723876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 29798253 - 29798304
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||||||||||| |||||||| || ||||||||||| |||| |||||||    
T  29798253 ttataagtaagaggactcataaacccattgccttaaggtcttggataagagt 29798304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 34364561 - 34364612
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||| | ||||| ||  |||||||||||||||||||||||    
T  34364561 ttataagtaagaggatccgtaaacccatagccttaaggttttgggtaagagt 34364612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 34364979 - 34365030
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||  ||||||| ||  |||||||||||||||||||||||    
T  34364979 ttataagtaagaggacccataaacccatagccttaaggttttgggtaagagt 34365030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 38804459 - 38804408
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||||||| ||||||| ||   ||||||||||||||||||||||    
T  38804459 ttataagtaagaggatccataaacccataaccttaaggttttgggtaagagt 38804408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 41759537 - 41759588
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||||||||||| ||| ||||||  || ||||||||||||||||||||||||    
T  41759537 ttataagtaagatgatccataaatccattgccttaaggttttgggtaagagt 41759588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 450
Target Start/End: Complemental strand, 44290929 - 44290882
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaa 450  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||    
T  44290929 ttataagtaagaggacccataaacccattgccttaaggttttgggtaa 44290882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 450
Target Start/End: Complemental strand, 1188697 - 1188645
Alignment:
Q  398 atatgttataagtaagaggattcataaactcactgccttaaggttttgggtaa 450  Q
    |||| |||||||| ||| || ||||||||||| ||| ||||||||||||||||    
T  1188697 atattttataagtgagaagactcataaactcattgctttaaggttttgggtaa 1188645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 3497279 - 3497235
Alignment:
Q  167 aataatttaagaaaatgaaagtgattgaatataataacatgtgtc 211  Q
    |||||||| | | |||||||||||||||||||||| |||||||||    
T  3497279 aataattttaaataatgaaagtgattgaatataatcacatgtgtc 3497235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 27737006 - 27737034
Alignment:
Q  172 tttaagaaaatgaaagtgattgaatataa 200  Q
    |||||||||||||||||||||||||||||    
T  27737006 tttaagaaaatgaaagtgattgaatataa 27737034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 40494298 - 40494258
Alignment:
Q  167 aataatttaagaaaatgaaagtgattgaatataataacatg 207  Q
    ||||||||||| |||||||||||||||||| |||| |||||    
T  40494298 aataatttaagcaaatgaaagtgattgaatttaatcacatg 40494258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 443
Target Start/End: Complemental strand, 41184192 - 41184152
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttt 443  Q
    |||||||||||||||| ||||||| || |||||||||||||    
T  41184192 ttataagtaagaggatccataaacccattgccttaaggttt 41184152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 50187309 - 50187341
Alignment:
Q  167 aataatttaagaaaatgaaagtgattgaatata 199  Q
    |||||||||||||||| ||||||||||||||||    
T  50187309 aataatttaagaaaataaaagtgattgaatata 50187341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 1210 - 1159
Alignment:
Q  403 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    ||||||| || |||| |||||||| || ||||||||||||||||||||||||    
T  1210 ttataagaaaaaggactcataaacccattgccttaaggttttgggtaagagt 1159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 454
Target Start/End: Original strand, 5031 - 5087
Alignment:
Q  398 atatgttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 454  Q
    |||| |||||||||| | ||  |||||||||| ||||||| ||||||||||||||||    
T  5031 atatcttataagtaaaaagacccataaactcattgccttatggttttgggtaagagt 5087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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