View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12612_low_8 (Length: 296)

Name: NF12612_low_8
Description: NF12612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12612_low_8
NF12612_low_8
[»] chr6 (6 HSPs)
chr6 (160-296)||(31933319-31933455)
chr6 (1-99)||(31933158-31933256)
chr6 (168-290)||(31864335-31864464)
chr6 (24-99)||(13600559-13600634)
chr6 (24-99)||(28492607-28492682)
chr6 (24-99)||(29805017-29805092)
[»] chr2 (2 HSPs)
chr2 (26-99)||(5542438-5542511)
chr2 (65-99)||(1486470-1486504)
[»] chr3 (2 HSPs)
chr3 (24-99)||(49148886-49148961)
chr3 (26-96)||(34155947-34156017)
[»] chr7 (1 HSPs)
chr7 (1-99)||(16769056-16769154)
[»] chr1 (1 HSPs)
chr1 (24-83)||(23466301-23466360)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 8e-67; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 160 - 296
Target Start/End: Original strand, 31933319 - 31933455
Alignment:
Q  160 gcatactacaactgttttaagagttttgaacaatattgaatttgagtatttcttttggacaatttacaatcgaaataaattataagaataaataatttga 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31933319 gcatactacaactgttttaagagttttgaacaatattgaatttgagtatttcttttggacaatttacgatcgaaataaattataagaataaataatttga 31933418  T
Q  260 aaaatcgataagtttacttgctatacttattgtaaat 296  Q
    ||||||||| |||||||||||||||||||||||||||    
T  31933419 aaaatcgatgagtttacttgctatacttattgtaaat 31933455  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 31933158 - 31933256
Alignment:
Q  1 aatgtcgacaaatggaacctttatgccaagaacgccaatagggctccaattgctatactagaaagaagaattacctgaacctgctctccatgtataacc 99  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  31933158 aatgtcgacaaatggaacctttatgccatgaacgccaatagggctccaattgctataccaaaaagaagaattacctgaacctgctctccatgtataacc 31933256  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 31864335 - 31864464
Alignment:
Q  168 caactgttttaagagttttgaacaatat-------tgaatttgagtatttcttttggacaatttacaatcgaaataaattataagaataaataatttgaa 260  Q
    |||||||| |||||||||||||||||||       ||||||||  |||||||||| ||||||||| |||||||||||| ||||||||||| |||||||||    
T  31864335 caactgttctaagagttttgaacaatatcaacggttgaatttgcttatttcttttagacaatttaaaatcgaaataaactataagaataagtaatttgaa 31864434  T
Q  261 aaatcgataagtttacttgctatacttatt 290  Q
    |||| ||| || || ||||||| |||||||    
T  31864435 aaattgatgagcttccttgctacacttatt 31864464  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 13600634 - 13600559
Alignment:
Q  24 tgccaagaacgccaatagggctccaattgctatactagaaagaagaattacctgaacctgctctccatgtataacc 99  Q
    |||||||||| |||| ||||||||||||| ||||| | |||||||| |||| |||||||||||||||  |||||||    
T  13600634 tgccaagaacaccaagagggctccaattggtataccaaaaagaagagttacttgaacctgctctccaaatataacc 13600559  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 28492682 - 28492607
Alignment:
Q  24 tgccaagaacgccaatagggctccaattgctatactagaaagaagaattacctgaacctgctctccatgtataacc 99  Q
    |||||||| | |||| || |||||||||||| ||| | |||||||||||| ||||||||||||||||  |||||||    
T  28492682 tgccaagagcaccaagagtgctccaattgctgtaccaaaaagaagaattatctgaacctgctctccaaatataacc 28492607  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 29805092 - 29805017
Alignment:
Q  24 tgccaagaacgccaatagggctccaattgctatactagaaagaagaattacctgaacctgctctccatgtataacc 99  Q
    |||||||| | |||| || |||||||||||| ||| | |||||||||||| ||||||||||||||||  |||||||    
T  29805092 tgccaagagcaccaagagtgctccaattgctgtaccaaaaagaagaattatctgaacctgctctccaaatataacc 29805017  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 5542511 - 5542438
Alignment:
Q  26 ccaagaacgccaatagggctccaattgctatactagaaagaagaattacctgaacctgctctccatgtataacc 99  Q
    ||||||||||||| ||||||||||||||||||| | ||  ||||||||||||||| |||||||||  |||||||    
T  5542511 ccaagaacgccaagagggctccaattgctataccaaaagtaagaattacctgaacttgctctccaaatataacc 5542438  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 1486470 - 1486504
Alignment:
Q  65 gaagaattacctgaacctgctctccatgtataacc 99  Q
    ||||||||||||||||||||||||||||| |||||    
T  1486470 gaagaattacctgaacctgctctccatgtgtaacc 1486504  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 49148886 - 49148961
Alignment:
Q  24 tgccaagaacgccaatagggctccaattgctatactagaaagaagaattacctgaacctgctctccatgtataacc 99  Q
    |||||| ||| |||| ||||||||||||||||||| | |||||||| |||| |||||||||||||||  |||||||    
T  49148886 tgccaataacaccaagagggctccaattgctataccaaaaagaagagttacatgaacctgctctccaaatataacc 49148961  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 34155947 - 34156017
Alignment:
Q  26 ccaagaacgccaatagggctccaattgctatactagaaagaagaattacctgaacctgctctccatgtata 96  Q
    ||||||| ||||| ||| ||||||||||||||| | || || |||||||| || ||||||||||| |||||    
T  34155947 ccaagaatgccaagaggactccaattgctataccaaaaggatgaattacccgagcctgctctccaagtata 34156017  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 16769056 - 16769154
Alignment:
Q  1 aatgtcgacaaatggaacctttatgccaagaacgccaatagggctccaattgctatactagaaagaagaattacctgaacctgctctccatgtataacc 99  Q
    |||||| |||||||| ||||   |||||| ||| |||| ||| ||||| ||||||||| | |||||||| ||||||||||||||||||||  |||||||    
T  16769056 aatgtccacaaatggtacctgagtgccaataacaccaagaggactccagttgctataccaaaaagaagagttacctgaacctgctctccaaatataacc 16769154  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 23466360 - 23466301
Alignment:
Q  24 tgccaagaacgccaatagggctccaattgctatactagaaagaagaattacctgaacctg 83  Q
    |||||| ||| |||| ||||||||||||| ||||| | |||||||| |||||||||||||    
T  23466360 tgccaataacaccaagagggctccaattgttataccaaaaagaagagttacctgaacctg 23466301  T

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