View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12612_low_9 (Length: 294)
Name: NF12612_low_9
Description: NF12612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12612_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 31933452 - 31933696
Alignment:
| Q |
1 |
aaataagtattatatgtacatattaatgaatattgttaggttgtatgtgtgtagtccaaaggatgcatggtacagcctactgcagagtggttggattaag |
100 |
Q |
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| T |
31933452 |
aaataagtattatatgtacatattaatgaatattgttaggttgtatgtgtgtagtccaaatgatgcatggtgcagcctactgcagagtggttgggttaag |
31933551 |
T |
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| Q |
101 |
agagaattatttatttcttgggaaaataaatttaaatcgagagtagtttttgagaatcgagagtgatgttgtggtcagttctatgatgatg-cgtttttg |
199 |
Q |
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| T |
31933552 |
agagaattatttatttcttgggaaaataaatttaaatcgagagtagtttttgagaatcgagagtgatgttgtggtcagttctatgatgatgtcgtttttg |
31933651 |
T |
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| Q |
200 |
agattgggttaggtttggatagtattgttgttgtaattgagtttt |
244 |
Q |
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| T |
31933652 |
agattgggttaggtttggatagtattgttgttgtaattgggtttt |
31933696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 31864550 - 31864635
Alignment:
| Q |
59 |
aaggatgcatggtacagcctactgcagagtggttggattaagagagaattatttatttcttgggaaaataaatttaaatcgagagt |
144 |
Q |
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| T |
31864550 |
aaggatgcatggtgcaacctactgtaaagtggttggattaagagagaattatttatgtcttaagaaaataaatttcaatcaagagt |
31864635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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