View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12613_high_2 (Length: 388)
Name: NF12613_high_2
Description: NF12613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12613_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 75 - 367
Target Start/End: Original strand, 9329354 - 9329649
Alignment:
| Q |
75 |
acaagtgatcaacatcaaatcaaaataacataacataacaaaccaaattcaaccactttttccagcatcttttcatttgaatatgtaattaagaattatg |
174 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9329354 |
acaagtggtcaacatcaaatcaaaataacataacataacaaaccaaattcaaccacttttcccagcatcttttcatttgaatatgtaattaagaattatg |
9329453 |
T |
|
| Q |
175 |
agttcattgctaaacatgttgtctggataaaa---tgtttgcttgattcatagaaggctagtagtattatggactccaacacggattataaaacttcaat |
271 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9329454 |
agttcaatgctaaacatgttgtctggataaaaaaatgtttgcttgattcatagaaggctagtagtattatggactccaacacggattataaaacttcaat |
9329553 |
T |
|
| Q |
272 |
ttctgatttctcagttaatctagctgcatcacttagtctaagacatgaaagttgaaacataacttctcttaatacctttggaacaaccacctctga |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9329554 |
ttctgatttctcagttaatctagctgcatcacttagtctaagacatgaaagttgaaacataacttctcttaatacctttggaacaaccacctctga |
9329649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 75 - 201
Target Start/End: Original strand, 9335160 - 9335286
Alignment:
| Q |
75 |
acaagtgatcaacatcaaatcaaaataacataacataacaaaccaaattcaaccactttttccagcatcttttcatttgaatatgtaattaagaattatg |
174 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9335160 |
acaagtggtcaacatcaaatcaaaataacataacataacaaaccaaattcaaccactttttccagcatcttttcatctgaatatgtaattaagaattaga |
9335259 |
T |
|
| Q |
175 |
agttcattgctaaacatgttgtctgga |
201 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
9335260 |
aattcattgctaaacatgttgtctgga |
9335286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 9334652 - 9334711
Alignment:
| Q |
19 |
tcaaaatagatgtaataaaggatgaactatcaaaacctaatcaaactaaacgagaaacaa |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
9334652 |
tcaaaatagatgtaataaaggatgaactatcaaaacctaatcaaagtaaacgacaaacaa |
9334711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 9336120 - 9336184
Alignment:
| Q |
198 |
tggataaaatgtttgcttgattcatagaaggctagtagtattatggactccaacacggattataaaac |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| ||| |||| |
|
|
| T |
9336120 |
tggataaaatgtttgcttgattcatagaaggc---tagcattatggactacaacacggagtatcaaac |
9336184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 118
Target Start/End: Original strand, 9339914 - 9339949
Alignment:
| Q |
83 |
tcaacatcaaatcaaaataacataacataacaaacc |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9339914 |
tcaacatcaaatcaaaataacatagcataacaaacc |
9339949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 231059 - 231111
Alignment:
| Q |
113 |
caaaccaaattcaaccactttttccagcatcttttcatttgaatatgtaatta |
165 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||||||||| ||||| |||||||| |
|
|
| T |
231059 |
caaaccaaattccacctcgttttccagcatcttttcatatgaatgtgtaatta |
231111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 252113 - 252067
Alignment:
| Q |
119 |
aaattcaaccactttttccagcatcttttcatttgaatatgtaatta |
165 |
Q |
| |
|
|||||| ||| | ||||||||||||||||||| |||||||||||||| |
|
|
| T |
252113 |
aaattccacctcattttccagcatcttttcatatgaatatgtaatta |
252067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 8814898 - 8814852
Alignment:
| Q |
132 |
ttttccagcatcttttcatttgaatatgtaattaagaattatgagtt |
178 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || ||| ||||| |
|
|
| T |
8814898 |
ttttccagcatcttttcatatgaatatgtaattaggacttaagagtt |
8814852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 213842 - 213802
Alignment:
| Q |
78 |
agtgatcaacatcaaatcaaaataacataacataacaaacc |
118 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
213842 |
agtggtcaacatcgaatcaaaataacataacataaaaaacc |
213802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University