View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12613_low_3 (Length: 389)
Name: NF12613_low_3
Description: NF12613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12613_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 377
Target Start/End: Original strand, 7785843 - 7786204
Alignment:
| Q |
16 |
cttataacttaatcactaaccattttccttaaaaagaatcaataacctattttaagctatgtgtgacttgcgcgtgaaggattatgttgattaacttgta |
115 |
Q |
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| T |
7785843 |
cttataacttaatcactaaccattttccttaaaaagaatcaataacctattttaagctatgtgtgacttgcgcgtgaaggattatgttgattaacttgta |
7785942 |
T |
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| Q |
116 |
attcaatttgtgtagttgataattgagatttgtgagcatgttaatcgtttacggcaatcttgaccacactaggagctaatccacattatagtctttgtat |
215 |
Q |
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| T |
7785943 |
attcaatttgtgtagttgataattgagatttgtgagcatgttaatcgtttacggcaatcttgaccacactaggagctaatccacattatagtctttgtat |
7786042 |
T |
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| Q |
216 |
gagaaaataaatgaaaatatttgtccaaatgtataaatgtttatctttaccgtttttaattatcctacatgcttaaaagttattttcttccatatatatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7786043 |
gagaaaataaatgaaaatatttgtccaaatgtataaatgtttatctttaccgtttttaattatcctacatgcttaaaagttattttcttccatatatatt |
7786142 |
T |
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| Q |
316 |
gggggagttacctagacttatatacaacttgattcgatattccttaccttctttggtcagtg |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7786143 |
gggggagttacctagacttatatacaacttgattcgatattccttaccttctttggttagtg |
7786204 |
T |
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