View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12613_low_7 (Length: 287)
Name: NF12613_low_7
Description: NF12613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12613_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 41 - 276
Target Start/End: Original strand, 33023787 - 33024022
Alignment:
| Q |
41 |
tgaacatgtacccaacacaatcaatctaattctaagtatacatttatgtaagaataccaacctatgtaagtttaagttatattccaatttttcggtnnnn |
140 |
Q |
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| T |
33023787 |
tgaacatgtacccaacgcaatcaatctaattctaagtatacatttatgtaagaataccaacctatgtaagtttaagttatattcca-ttgttcggtaaaa |
33023885 |
T |
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| Q |
141 |
nnnnn-ggttatattccattgtgaaaatggacctaagtcgcatcatgctcacatatctatcaaaggtcacatcgtattgagataattggatataccgact |
239 |
Q |
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| T |
33023886 |
aaaaaaggttatattccattgtgaaaatggacctaagtcgcatcatgctcacatatctatcaaaggtcacatcgtgttgagataattggatataccgact |
33023985 |
T |
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| Q |
240 |
ctaattctactagatacaaagataatatgatgtccat |
276 |
Q |
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| T |
33023986 |
ctaattttactagatacaaagataatatgatatccat |
33024022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 30335246 - 30335213
Alignment:
| Q |
147 |
gttatattccattgtgaaaatggacctaagtcgc |
180 |
Q |
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| T |
30335246 |
gttatattccattgtgaaaatggacctatgtcgc |
30335213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 30335311 - 30335236
Alignment:
| Q |
53 |
caacacaatcaatctaa--ttctaagtatacatttatgtaagaataccaacctatgtaagtttaagttatattcca |
126 |
Q |
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| T |
30335311 |
caacacgatcaatctaaaattcaaaatatagatttctataagaataccaacctctgtaagttccagttatattcca |
30335236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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