View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12614_high_1 (Length: 768)
Name: NF12614_high_1
Description: NF12614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12614_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 707; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 9 - 751
Target Start/End: Original strand, 1493579 - 1494321
Alignment:
| Q |
9 |
agcaaaggctgcagttgatggtgtacctggctgccaaaacaaggtttcatgtgctgacattttggcattggcaactagggatgtcatagcattggtaaat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1493579 |
agcaaaggctgcagttgatggtgtacctggctgccaaaacaaggtttcatgtgctgacattttggcattggcaactagggatgtcatagcattggtaaat |
1493678 |
T |
|
| Q |
109 |
aatcaacaatcataatataaaattttggttctttttaacaatcctaatataagttaataaaagcaatttagtaaagttcagttcgaaaaggtatagttca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1493679 |
aatcaacaatcataatataaaattttggttctttttaacaatcctaatataagttaataaaagcaatttagtaaagttcagttcgaaaaggtttagttca |
1493778 |
T |
|
| Q |
209 |
gtttactgtaatgatagttctagtgcgttcgattggaaacacagaactggtgtaccaaacctttataccagtttggtttgattcacgacaaaccataaaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1493779 |
gtttactgtaatgatagttctagtgcgttcgattggaaacacagaactggtgtaccgaacctttataccagtttggtttgattcacgacaaaccataaaa |
1493878 |
T |
|
| Q |
309 |
aattctgttcaattttactaaattattataacggttcggtccagttttccttcttgaaccggttaaaaccttgattgggcggctgctcccatatataagc |
408 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1493879 |
aattctgttcagttttactaaattattataacagttcggtccagttttccttcttgaaccggttaaaaccttgattgggcggctactcccatatataagc |
1493978 |
T |
|
| Q |
409 |
atatttatagaatatcattcttcttttggctaatatttatgacattattatttatcaaataactttggccatgtagataattgtaacattgttattcatt |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1493979 |
atatttatagaatatcattcttcttttggctaatatttatgacattattatttattaaataactttggccatgtagataattgtaacattgttattcatt |
1494078 |
T |
|
| Q |
509 |
gtaaaatttagctgaatacaaaacttaattactttttcagacaggagggccatcttatgcagtagagttgggacggctagatgggagaatctcgacaaaa |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1494079 |
gtaaaatttagctgaatacaaaacttaattgcttttccagacaggagggccatcttatgcagtagagttgggacggctagatgggagaatctcgacaaaa |
1494178 |
T |
|
| Q |
609 |
gcaagtgtcacaaaccatttacctcatccagaattcaaactagcaaagctaaccaaaatgtttgcttcacatggcctcactcttactgatctaattgctc |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1494179 |
gcaagtgtcacaaaccatttacctcatccagaattcaaactagcaaagctaaccaaaatgtttgcttcacatggcctcactcttactgatctaattgctc |
1494278 |
T |
|
| Q |
709 |
tatcaggtactttattcataattatgagcacaaaacttgttcg |
751 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1494279 |
tatcaggtgctttattcataattatgagcacaaaacttgttcg |
1494321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 472 - 677
Target Start/End: Original strand, 1488027 - 1488232
Alignment:
| Q |
472 |
tttggccatgtagataattgtaacattgttattcattgtaaaatttagctgaatacaaaacttaattactttttcagacaggagggccatcttatgcagt |
571 |
Q |
| |
|
|||||| |||||||||||| |||||| |||||| ||||| ||||||| ||||||| ||| |||| |||| ||||| ||||||| |||||||| |||| |
|
|
| T |
1488027 |
tttggctatgtagataatttcaacattattattccttgtagaatttagatgaataccaaaaaaaattgctttatcagataggagggacatcttatacagt |
1488126 |
T |
|
| Q |
572 |
agagttgggacggctagatgggagaatctcgacaaaagcaagtgtcacaaaccatttacctcatccagaattcaaactagcaaagctaaccaaaatgttt |
671 |
Q |
| |
|
||| |||||| || || | | |||||||||||||||||| | |||||||||| |||||||||||| ||||| ||| || |||||||||||||||||||| |
|
|
| T |
1488127 |
agaattgggagggttaaacgagagaatctcgacaaaagccaatgtcacaaactatttacctcatcttgaatttaaattatcaaagctaaccaaaatgttt |
1488226 |
T |
|
| Q |
672 |
gcttca |
677 |
Q |
| |
|
|||||| |
|
|
| T |
1488227 |
gcttca |
1488232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University