View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12614_high_9 (Length: 315)
Name: NF12614_high_9
Description: NF12614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12614_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 39725261 - 39725567
Alignment:
| Q |
1 |
aaatcaaagattttatgatgcagtcaacggcagaaaattaaatcaagagagagtcttgatctaaccgactacatttgactacgccataatttgaaccgtg |
100 |
Q |
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||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39725261 |
aaatcaaagcttttatgatgcaatcaacggcagaaaattaaatcaagagag--tcttgatctaaccgactacatttgactacgccataatttgaaccgtg |
39725358 |
T |
|
| Q |
101 |
tccaatttaaattgaacagttgagattgtaaatctgcatgaacatag-aaaaatccattgcatcgatctaccagcaccaccattcatatgaatcatgatg |
199 |
Q |
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||||||||| ||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39725359 |
tccaatttagattgaacgattgagattgtaaaactgcatgaacataggaaaaatccattgcatcgatctaccagcaccaccattcatatgaatcatgatg |
39725458 |
T |
|
| Q |
200 |
agtttgataataaagcctcttcatcagcatgacttgcatgtaactctttaagccattcaaatgttctacgacgtgacataacctttttcccttgcttttg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39725459 |
agtttgataataaagcctcttcatcagcatgacttgcatgtaactctttaagccattcaaatgttctacgacgtgacataacctttttcccttgcttttg |
39725558 |
T |
|
| Q |
300 |
cctttgctt |
308 |
Q |
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||||||||| |
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| T |
39725559 |
cctttgctt |
39725567 |
T |
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