View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12614_low_10 (Length: 321)
Name: NF12614_low_10
Description: NF12614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12614_low_10 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 108 - 321
Target Start/End: Complemental strand, 32531241 - 32531028
Alignment:
| Q |
108 |
aggtgaaaaatcgatgataaagaaacgttacatgcacataacagaagaatttctgaaagagaatccaaacatgtgtgcatacatggcaccatcactagac |
207 |
Q |
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| T |
32531241 |
aggtgaaaaatcgatgataaagaaacgttacatgcacataacagaagaatttctgaaagagaatccaaacatgtgtgcatacatggcaccatcactagac |
32531142 |
T |
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| Q |
208 |
gcaagacaagatttagtggtagtggaagtaccaaagctaggtaaagatgctgcnnnnnnngccatagctgaatggggtcaaccaaaatccaaaatcaccc |
307 |
Q |
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| T |
32531141 |
gcaagacaagatttagtggtagtggaagtaccaaagctaggtaaagatgctgcaaaaaaagccatagctgaatggggtcaaccaaaatccaaaatcaccc |
32531042 |
T |
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| Q |
308 |
acgtagttttctgc |
321 |
Q |
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| T |
32531041 |
acgtagttttctgc |
32531028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 32531365 - 32531318
Alignment:
| Q |
17 |
aatggttacattttaaaatcttgattatagaaaaaaattaaaatctctt |
65 |
Q |
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| T |
32531365 |
aatggttacattttaaaatcttgattatagaa-aaaattaaaatctctt |
32531318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 35250728 - 35250822
Alignment:
| Q |
136 |
tacatgcacataacagaagaatttctgaaagagaatccaaacatgtgtgcatacatggcaccatcactagacgcaagacaagatttagtggtagt |
230 |
Q |
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| T |
35250728 |
tacatgcatttaacagaggaaattctgaaagaaaatcccaatatgtgtgcttacatggcaccatcattggatgcaagacaagatatggtggtagt |
35250822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 37863523 - 37863471
Alignment:
| Q |
208 |
gcaagacaagatttagtggtagtggaagtaccaaagctaggtaaagatgctgc |
260 |
Q |
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| T |
37863523 |
gcaagacaggatatggtggttgtggaagtaccaaagctaggaaaagaggctgc |
37863471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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