View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12614_low_12 (Length: 282)

Name: NF12614_low_12
Description: NF12614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12614_low_12
NF12614_low_12
[»] chr3 (2 HSPs)
chr3 (193-266)||(11630468-11630543)
chr3 (79-183)||(5574053-5574159)
[»] chr1 (1 HSPs)
chr1 (159-194)||(25280964-25280999)
[»] chr4 (1 HSPs)
chr4 (168-196)||(4118132-4118160)


Alignment Details
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 11630468 - 11630543
Alignment:
Q  193 atacttgtgatgtcattattccttgataaacaaagtgatg--acataacatagatatattgaatcaatcaactaca 266  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||| ||| ||||| ||||| ||||||||||||    
T  11630468 atacttgtgatgtcattattccttgataaacaaagtgatgacacatagcatcgatatgttgaagcaatcaactaca 11630543  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 5574053 - 5574159
Alignment:
Q  79 atttgaaattcaaatttcagctttaaatggatataggtg--aaaaattcccgcccaggagcattagggtttgggaaaagaatgtatacattatgtacctt 176  Q
    ||||||||||||||||||||||||||||| | | |||||  ||||| ||||||| |  ||||||||||||| ||||||||| |||| |||| ||||||||    
T  5574053 atttgaaattcaaatttcagctttaaatgcaaacaggtgggaaaaaatcccgccaaaaagcattagggtttaggaaaagaaggtatgcattgtgtacctt 5574152  T
Q  177 tggatta 183  Q
    || ||||    
T  5574153 tgtatta 5574159  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 194
Target Start/End: Complemental strand, 25280999 - 25280964
Alignment:
Q  159 gtatacattatgtacctttggattagatataaagat 194  Q
    |||| |||||||||||||||||||||||||||||||    
T  25280999 gtatgcattatgtacctttggattagatataaagat 25280964  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 196
Target Start/End: Original strand, 4118132 - 4118160
Alignment:
Q  168 atgtacctttggattagatataaagatac 196  Q
    |||||||||||||||||||||||||||||    
T  4118132 atgtacctttggattagatataaagatac 4118160  T

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