View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12614_low_2 (Length: 563)

Name: NF12614_low_2
Description: NF12614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12614_low_2
NF12614_low_2
[»] chr4 (6 HSPs)
chr4 (273-509)||(25657847-25658082)
chr4 (42-269)||(25656303-25656514)
chr4 (381-479)||(1470468-1470567)
chr4 (381-470)||(6936100-6936190)
chr4 (384-455)||(43610034-43610106)
chr4 (405-470)||(31598696-31598761)
[»] chr7 (1 HSPs)
chr7 (376-480)||(20904340-20904445)
[»] chr2 (3 HSPs)
chr2 (376-477)||(10991079-10991181)
chr2 (343-479)||(26831851-26831988)
chr2 (376-479)||(30939046-30939150)
[»] chr1 (1 HSPs)
chr1 (417-468)||(25141309-25141360)
[»] chr6 (1 HSPs)
chr6 (408-479)||(31177968-31178039)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 9e-90; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 273 - 509
Target Start/End: Original strand, 25657847 - 25658082
Alignment:
Q  273 gtaatatcttcaagggataaagaactatttgcacaatttacacaacttaactcatgatgnnnnnnnngtttgtctatgatctgtaatttagaacgataac 372  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||        ||||||||||||||||||||| |||||||||||    
T  25657847 gtaatatcttcaagggataaacagctatttgcacaatttacacaacttaactcatgatgttttttt-gtttgtctatgatctgtaattcagaacgataac 25657945  T
Q  373 ttaagagaaagtaaaaccaatacaccaactatatcagtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatttc 472  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||| | |||||||||| ||||||||||||||||||||||||||||||||||||    
T  25657946 ttaagagaaagtaaaaccaatacaccaactatattagtcacaagcaacaagactacataatttttcataattcattaacattaaatcaattcgacatttc 25658045  T
Q  473 gttaacaacttaacactacacaactccccatttcttc 509  Q
    |||||||||||||||| |||||||||||| |||||||    
T  25658046 gttaacaacttaacaccacacaactccccctttcttc 25658082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 42 - 269
Target Start/End: Original strand, 25656303 - 25656514
Alignment:
Q  42 tgatgattgagaaggaaatgacctgggaatcaaatatctagaagaaaatctgatgtacgaccagtttgcaaaaacatactttagtgattgattgtaatcg 141  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||    
T  25656303 tgatgattgagaaggaaatgacttgggaatcaaatatctagaagaaaatctgatgtacgaccagtttgcaag----------------tgattgtaatcg 25656386  T
Q  142 aatgattatagtgaattaagtcttcaactatagagagacaaattatgtccgcagacgagactaaaggcagctgtcggttagattgcgaaccaatataaaa 241  Q
    ||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  25656387 aatgattatagtgaattaagtcttcgactgtagagagacaaattctgtccgcagacgagactaaaggcagctgtcggtcagattgtgaaccaatataaaa 25656486  T
Q  242 cataatgcgtctttatggtttaactcat 269  Q
    ||||||| ||||||||| || |||||||    
T  25656487 cataatgtgtctttatgattgaactcat 25656514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 381 - 479
Target Start/End: Complemental strand, 1470567 - 1470468
Alignment:
Q  381 aagtaaaaccaatacaccaactatatca-gtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatttcgttaaca 479  Q
    ||||||| | ||||||||||||||| || |||| | | ||||||| ||| |||| | ||||||||||||||||||||||||||||||||||  |||||||    
T  1470567 aagtaaaccgaatacaccaactataccaagtcatagataacaacattacctaatctttcataattcattaacattaaatcaattcgacattaagttaaca 1470468  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 470
Target Start/End: Original strand, 6936100 - 6936190
Alignment:
Q  381 aagtaaaaccaatacaccaactatatca-gtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatt 470  Q
    |||||||| ||||||| ||| |||| || |||| ||||||||||| |||||||||| |||| ||||||||| |||||||||||||| ||||    
T  6936100 aagtaaaatcaatacatcaattataccaagtcataaacaacaacattacataatttttcatgattcattaatattaaatcaattcggcatt 6936190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 455
Target Start/End: Complemental strand, 43610106 - 43610034
Alignment:
Q  384 taaaaccaatacaccaactatatca-gtcacaaacaacaacagtacataatttctcataattcattaacatta 455  Q
    ||||||||||||| |||||||| || |||| ||||||||||| | |||||||| |||| ||||||| ||||||    
T  43610106 taaaaccaatacatcaactataccaagtcataaacaacaacactccataatttgtcatgattcatttacatta 43610034  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 470
Target Start/End: Original strand, 31598696 - 31598761
Alignment:
Q  405 atcagtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatt 470  Q
    |||||||| |||||| |||| |||||||| | ||| |||| || || |||||||||||||||||||    
T  31598696 atcagtcataaacaagaacaatacataatctttcacaattgatcaaaattaaatcaattcgacatt 31598761  T

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Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 376 - 480
Target Start/End: Original strand, 20904340 - 20904445
Alignment:
Q  376 agagaaagtaaaaccaatacaccaactatatca-gtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatttcgt 474  Q
    |||| ||| |||||||||||||||||||||||| |||| ||   |||||| | |||||||| |||||||||||||||||||||||||||||||||| |||    
T  20904340 agaggaagaaaaaccaatacaccaactatatcaagtcataagttacaacattgcataatttttcataattcattaacattaaatcaattcgacattacgt 20904439  T
Q  475 taacaa 480  Q
    ||||||    
T  20904440 taacaa 20904445  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 376 - 477
Target Start/End: Complemental strand, 10991181 - 10991079
Alignment:
Q  376 agagaaagtaaaaccaatacaccaactatatca-gtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatttcgt 474  Q
    |||| |||||||| |||||||||||||||| || |||| || | | |||| |||||||||| ||||||||||||||||||||||||  |||||||| |||    
T  10991181 agaggaagtaaaaacaatacaccaactataccaagtcataagctataacattacataatttttcataattcattaacattaaatcagctcgacattgcgt 10991082  T
Q  475 taa 477  Q
    |||    
T  10991081 taa 10991079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 343 - 479
Target Start/End: Original strand, 26831851 - 26831988
Alignment:
Q  343 tgtctatgatctgtaatttagaacgataacttaagagaaagtaaaaccaatacaccaactatatc-agtcacaaacaacaacagtacataatttctcata 441  Q
    ||||||||| |||||||| | ||||| || || |||| ||||| |||||||||||||| ||||   ||||| || |||||||| |||||||| | |||||    
T  26831851 tgtctatgacctgtaattcaaaacgacaatttcagaggaagtacaaccaatacaccaagtatacagagtcataagcaacaacattacataatctttcata 26831950  T
Q  442 attcattaacattaaatcaattcgacatttcgttaaca 479  Q
    ||||| ||||||||||| | ||| ||||| ||||||||    
T  26831951 attcaataacattaaattagttcaacattacgttaaca 26831988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 376 - 479
Target Start/End: Complemental strand, 30939150 - 30939046
Alignment:
Q  376 agagaaagtaaaaccaatacaccaactatatca-gtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatttcgt 474  Q
    |||| |||||||| |||||||| ||||||| || |||| || |||| ||| || ||||| | ||||||||||||| ||||||||||||| |||||| |||    
T  30939150 agaggaagtaaaatcaatacactaactataccaagtcataagcaaccacattatataatctatcataattcattagcattaaatcaatttgacattacgt 30939051  T
Q  475 taaca 479  Q
    |||||    
T  30939050 taaca 30939046  T

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Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 417 - 468
Target Start/End: Complemental strand, 25141360 - 25141309
Alignment:
Q  417 caacaacagtacataatttctcataattcattaacattaaatcaattcgaca 468  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  25141360 caacaacactacataatttttcataattcattaacattaaatcaattcgaca 25141309  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 479
Target Start/End: Complemental strand, 31178039 - 31177968
Alignment:
Q  408 agtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatttcgttaaca 479  Q
    ||||| |||||| |||  |||||||||| |||  ||||||||||||||||||||||| ||||| ||| ||||    
T  31178039 agtcataaacaataacgttacataatttttcaagattcattaacattaaatcaattcaacattacgtgaaca 31177968  T

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