View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12614_low_3 (Length: 489)
Name: NF12614_low_3
Description: NF12614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12614_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 17 - 473
Target Start/End: Complemental strand, 30276186 - 30275732
Alignment:
| Q |
17 |
atgtggagaaacttctgcttatgcctcagaacttatgttgtggtcatatgaagaaacaatgtcatttattacttgttttgagaaatttgttaaatccaca |
116 |
Q |
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| T |
30276186 |
atgtggagaaacttctgcttatgcctcagaacttatgttgtggtcatatgaagaaacaatgtcatttattacttgttttgagaaatttgttaaatccaca |
30276087 |
T |
|
| Q |
117 |
tcagaagtaagtgttggtttgtcctctgccataaaggctgcgaagtttgcagtcatgtattgttctttgttagaagatcagaaattaatgctgctgccat |
216 |
Q |
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| T |
30276086 |
tcagaagtatgtgttggtttgtcctctgccataaaggctgcgaagtttgcagtcatgtattgttctttgttagaagatcagaaattaatgctgctgccat |
30275987 |
T |
|
| Q |
217 |
acttggtaaatcaactctttccttgcattgaagaggttttgaatacacacataaaccactttaagaaagtgattcctatattctcaataagtgattcttg |
316 |
Q |
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| T |
30275986 |
acttggtaaatcaactctttccttgcattgaagaggttttgaatacacacataaaccactttaagaaagtgattcctatattctcaataagtgattcttg |
30275887 |
T |
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| Q |
317 |
gattttagagaaataccttgtgtctggagtgtttggcggagctgggtcttcaaccgaacaacctgattattgtctgctaacttctagtggccggaaggtt |
416 |
Q |
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| T |
30275886 |
gattttagagaaataccttgtgtctggagtgtttggcggagctgggtcttcaaccgaacaacctgattattgtctgctaacttctagtggccggaaggtt |
30275787 |
T |
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| Q |
417 |
ctgacactattacaggtgtgttcataattaccatacattattaaacattactgatgt |
473 |
Q |
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| T |
30275786 |
ctgacactattacaggtgtgttc--aattaccatacattattaaacattactgatgt |
30275732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 63 - 473
Target Start/End: Complemental strand, 7779440 - 7779043
Alignment:
| Q |
63 |
tatgaagaaacaatgtcatttattacttgttttgagaaatttgttaaatccacatcagaagtaagtgttggtttgtcctctgccataaaggctgcgaagt |
162 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||| ||||||||| || |
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| T |
7779440 |
tatgaagaaacaatgtcatttattacttgttttgacaa-tttgttaaatgcacatcagaagtaagtgttggtttgtcctatgccataaatt-------gt |
7779349 |
T |
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| Q |
163 |
ttgcagtcatgtattgttctttgttagaagatcagaaattaatgctgctgccatacttggtaaatcaactctttccttgcattgaagaggttttgaatac |
262 |
Q |
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| T |
7779348 |
ttgcagtcatggattgttct--gttagaagatcagaaattaatgctgctaccatacttggtaaagcatctctttccttgcattgaagag-ttttgaatac |
7779252 |
T |
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| Q |
263 |
acacataaaccactttaagaaagtgattcctatattctcaataagtgattcttggattttagagaaataccttgtgtctggagtgtttggcggagctggg |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7779251 |
acacataaaccactttaagaaagtgattcctatattctcagtaagtgattcttggattttagagaaataccttgtgtctggagtgtttggcggagctgga |
7779152 |
T |
|
| Q |
363 |
tcttcaaccgaacaacctgattattgtctgctaacttctagtggccggaaggttctgacactattacaggtgtgttcataattaccatacattattaaac |
462 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
7779151 |
tcttcaaaagaacaacctgattattgtctgctaacttctagtggccagaacgttctgacactattacaggtgtgttc--aattaccatatattattaaac |
7779054 |
T |
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