View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12614_low_4 (Length: 431)
Name: NF12614_low_4
Description: NF12614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12614_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 22 - 388
Target Start/End: Complemental strand, 4846139 - 4845769
Alignment:
| Q |
22 |
tggtcatgaatttactaatcatttcgacaaatagttaatatgtagctatgttcaatttgttaataatgttctttatcttctcat---attcatattccac |
118 |
Q |
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| T |
4846139 |
tggtcatgaatttactaatcatttcgacaaatagttaatacgtagctatgttcaatttgctaataatgttctttatcttctcatcatattcatattccac |
4846040 |
T |
|
| Q |
119 |
ttgagtcttcttgctctttcttttacaatctctactaccattcctattattgtttatcnnnnnnnnnacatctcagttatttttt-cctttctcgagggg |
217 |
Q |
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| T |
4846039 |
ttgagtcttcttgctcttttttttacaatctttactaccattcttattattgtttatcttttttttgacatctcagttatttttttcctttctcgagggg |
4845940 |
T |
|
| Q |
218 |
ttattcaattggcaatgtggaaattatataaccaaaaccatcaaatgggagatatgattgtgtaatagtggaaacagaacttttcataatttaatggcta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
4845939 |
ttattcaattggcaatgtggaaattatataaccaaaaccatcaaatgggagatatgattgtgtaatagtggaaactgaacttttcatactttaatggcta |
4845840 |
T |
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| Q |
318 |
ggacatatcacatgttttcatatgtctgttttgaaacgttgttttatcccccatgactttggcttattgtc |
388 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4845839 |
ggacatatcacatgttttcatatgtctgttttggaacgttgttttatcccccatgactttggcttattgtc |
4845769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 4080564 - 4080776
Alignment:
| Q |
21 |
gtggtcatgaatttactaatcatttcgacaaatagttaatatgtagctatgttcaatttgttaataatgttctttatcttctcatattcatattccactt |
120 |
Q |
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| T |
4080564 |
gtggtcatgaatttactaatcatttcgacaaatagttaatatgtagctatgttcaatttgctaataatgttctttatcttctcatattcatattccgctt |
4080663 |
T |
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| Q |
121 |
gagtcttcttgctctttcttttacaatctctactaccattcctattattgtttatcnnnnnnnnnacatctcagtta-ttttttcctttctcgaggggtt |
219 |
Q |
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||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
4080664 |
gagtctttttgctcttttttttacaatttctactaccattcctattattgtttatc-tttttttgacatctcagttatttttttcctttctcgaggggtt |
4080762 |
T |
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| Q |
220 |
attcaattggcaat |
233 |
Q |
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||| |||||||||| |
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| T |
4080763 |
attaaattggcaat |
4080776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 26122805 - 26122882
Alignment:
| Q |
20 |
cgtggtcatgaatttactaatcatttcgacaaatagttaatatgtagctatgttcaatttgttaataatgttctttatctt |
100 |
Q |
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|||| ||||||||||||||| ||||| | ||| ||||||||||| ||||| ||||||| ||||||| ||||||||||| |
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| T |
26122805 |
cgtgttcatgaatttactaaccattttggaaaa---ttaatatgtagatatgtacaatttgctaataatattctttatctt |
26122882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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