View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12614_low_6 (Length: 404)
Name: NF12614_low_6
Description: NF12614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12614_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 12631072 - 12631324
Alignment:
| Q |
1 |
cggagccttcattgttgacttaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagctactttc |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12631072 |
cggagccttcattgttgaattaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagctactttc |
12631171 |
T |
|
| Q |
101 |
tagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatatttgtagttcatgaaattttctatttgcctttactcataagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12631172 |
tagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatttttgtagttcatgaaagtttctatttgcctttactcataagtg |
12631271 |
T |
|
| Q |
201 |
tctatccatgcatttcttgaacttttcatctttttcatagtaattgattattc |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12631272 |
tctatccatgcatttcttgaacttttcatctttttcatagtaattgattattc |
12631324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 45288882 - 45289134
Alignment:
| Q |
1 |
cggagccttcattgttgacttaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagctactttc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45288882 |
cggagccttcattgttgaattaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagctactttc |
45288981 |
T |
|
| Q |
101 |
tagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatatttgtagttcatgaaattttctatttgcctttactcataagtg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45288982 |
tagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctaatatttttgtagttcatgaaagtttctatttgcctttactcataagtg |
45289081 |
T |
|
| Q |
201 |
tctatccatgcatttcttgaacttttcatctttttcatagtaattgattattc |
253 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45289082 |
tctatcgatgcatttcttgaacttttcatctttttcatagtaattgattattc |
45289134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 289 - 388
Target Start/End: Original strand, 45289203 - 45289302
Alignment:
| Q |
289 |
gaaaaggtaaaatatggattaaaagacactaagcacaattagtgtaacgatgtgcnnnnnnnctacataatctttgtaagtaatcctcaataaggaatag |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
45289203 |
gaaaaggtaaaatatggattaaaagacactaagcacaattagtgcaacgatgtgcaaaaaaactacataatctttgtaagtaagcctcaataaggaatag |
45289302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31607904 - 31607683
Alignment:
| Q |
1 |
cggagccttcattgttgacttaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagctactttc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31607904 |
cggagccttcattgttgaattaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagctactttc |
31607805 |
T |
|
| Q |
101 |
tagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatatttgtagttcatgaaattttctatttgcctttactcataagtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
31607804 |
tagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatttttgtagttcatgaaagtttctatttgcatttactcataagtg |
31607705 |
T |
|
| Q |
201 |
tctatccatgcatttcttgaac |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
31607704 |
tctatccatgcatttcttgaac |
31607683 |
T |
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