View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12615_high_2 (Length: 663)

Name: NF12615_high_2
Description: NF12615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12615_high_2
NF12615_high_2
[»] chr8 (2 HSPs)
chr8 (101-251)||(12933811-12933961)
chr8 (191-228)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (101-251)||(14177081-14177231)
chr4 (101-251)||(28608644-28608794)
chr4 (190-243)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (221-258)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (221-258)||(796698-796735)
chr6 (221-258)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (221-258)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 251
Target Start/End: Complemental strand, 12933961 - 12933811
Alignment:
Q  101 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 199  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || || ||||||||||||||||  ||    
T  12933961 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc 12933863  T
Q  200 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 251  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933862 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  191 ggttgctccatataaatctcctcttccaaatctccatg 228  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 251
Target Start/End: Complemental strand, 14177231 - 14177081
Alignment:
Q  101 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 199  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || || ||||||||||||||||  ||    
T  14177231 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc 14177133  T
Q  200 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 251  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177132 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 251
Target Start/End: Original strand, 28608644 - 28608794
Alignment:
Q  101 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 199  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || ||| |||||||||||||||  ||    
T  28608644 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctt-aaatccttctggttgaacc 28608742  T
Q  200 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 251  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  28608743 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 28608794  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  190 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 243  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  221 tctccatgaagaaatgcagttttcacatccaactgctc 258  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  221 tctccatgaagaaatgcagttttcacatccaactgctc 258  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  221 tctccatgaagaaatgcagttttcacatccaactgctc 258  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  221 tctccatgaagaaatgcagttttcacatccaactgctc 258  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

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