View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12615_high_3 (Length: 393)
Name: NF12615_high_3
Description: NF12615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12615_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 12933825 - 12933984
Alignment:
| Q |
1 |
gcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgtgcaaattgaataag |
99 |
Q |
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| T |
12933825 |
gcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggtttgcaaattgaagaag |
12933923 |
T |
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| Q |
100 |
agtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga |
160 |
Q |
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| T |
12933924 |
agcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga |
12933984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
| Q |
10 |
catggagatttggaagaggagatttatatggagcaacc |
47 |
Q |
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| T |
36999937 |
catggtgacttggaagaggagatttatatggagcaacc |
36999974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 28608780 - 28608621
Alignment:
| Q |
1 |
gcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgtgcaaattgaataag |
99 |
Q |
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| T |
28608780 |
gcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggtttgcaaattgaagaag |
28608682 |
T |
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| Q |
100 |
agtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga |
160 |
Q |
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| T |
28608681 |
agcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga |
28608621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 14177095 - 14177231
Alignment:
| Q |
1 |
gcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgtgcaaattgaataag |
99 |
Q |
| |
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|||||||||||||||||||| || || ||||| || |||| |||||||||||||||| || || || ||||| | ||| |||| ||||||||||| ||| |
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| T |
14177095 |
gcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggtttgcaaattgaagaag |
14177193 |
T |
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| Q |
100 |
agtctttatggattgaagcaggcaccaaggcagtggta |
137 |
Q |
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| T |
14177194 |
agcttgtatggattaaaacaagcaccaagacaatggta |
14177231 |
T |
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