View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12615_high_6 (Length: 309)
Name: NF12615_high_6
Description: NF12615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12615_high_6 |
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| [»] scaffold1407 (1 HSPs) |
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| [»] scaffold0177 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 15933115 - 15932835
Alignment:
| Q |
1 |
tgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaatatagactcacggcttgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15933115 |
tgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaatatagactcacggcttgag |
15933016 |
T |
|
| Q |
101 |
ttatagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagcaattgaa |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15933015 |
ttatagcaaggtaggtagcaacatggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagcaattgaa |
15932916 |
T |
|
| Q |
201 |
atagttacttaattcaaaattgcaattaacaaaggttctgaatttgtaaaattgtacgatagctaaacaaaagcttaaatt |
281 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
15932915 |
atagttacttaattcaaaattgcaattaacaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaatt |
15932835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 15941457 - 15941177
Alignment:
| Q |
1 |
tgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaatatagactcacggcttgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15941457 |
tgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaatatagactcacggcttgag |
15941358 |
T |
|
| Q |
101 |
ttatagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagcaattgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15941357 |
ttatagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaagttggaatgaaaaaggaatgatgaaaacaggaactagcaattgaa |
15941258 |
T |
|
| Q |
201 |
atagttacttaattcaaaattgcaattaacaaaggttctgaatttgtaaaattgtacgatagctaaacaaaagcttaaatt |
281 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
15941257 |
atagttacttaattcaaaattgcaattaacaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaatt |
15941177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 34657547 - 34657267
Alignment:
| Q |
1 |
tgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaatatagactcacggcttgag |
100 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34657547 |
tgcagccaggaatttgaagaaatacacacagcactattgaattcttagcaatggaaattcaattaaatagccacccaacaatatagactcacggcttgag |
34657448 |
T |
|
| Q |
101 |
ttatagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagcaattgaa |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34657447 |
ttaaagcaaggtaggtagcaacacggcaattggaaaatacggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagaaattgaa |
34657348 |
T |
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| Q |
201 |
atagttacttaattcaaaattgcaattaacaaaggttctgaatttgtaaaattgtacgatagctaaacaaaagcttaaatt |
281 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34657347 |
atagtaacttaattcaaaattgcaattaacaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaatt |
34657267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 11164553 - 11164273
Alignment:
| Q |
1 |
tgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaatatagactcacggcttgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
11164553 |
tgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacacaacaatatagactcatggcttgag |
11164454 |
T |
|
| Q |
101 |
ttatagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagcaattgaa |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11164453 |
ttaaagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagaaattgaa |
11164354 |
T |
|
| Q |
201 |
atagttacttaattcaaaattgcaattaacaaaggttctgaatttgtaaaattgtacgatagctaaacaaaagcttaaatt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11164353 |
atagttacttaattcaaaattgcaattaagaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaatt |
11164273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1407 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1407
Description:
Target: scaffold1407; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 1239 - 1305
Alignment:
| Q |
216 |
aaaattgcaattaacaaaggttctgaatttgtaa-aattgtacgatagctaaacaaaagcttaaatt |
281 |
Q |
| |
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|||||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||||| |||| |
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| T |
1239 |
aaaattgcaattcacaaaggttctgaagttgtaagaattgtatgatagctaaacaaaagcttgaatt |
1305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 32609 - 32557
Alignment:
| Q |
216 |
aaaattgcaattaacaaaggttctgaatttgtaa-aattgtacgatagctaaa |
267 |
Q |
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|||||||||||| |||||| ||||||| |||||| ||||||||||||||||| |
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| T |
32609 |
aaaattgcaattcacaaagattctgaagttgtaaggattgtacgatagctaaa |
32557 |
T |
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