View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12616_high_1 (Length: 437)
Name: NF12616_high_1
Description: NF12616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12616_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 49304981 - 49305401
Alignment:
| Q |
11 |
cacagaccctgcaggatataatccatggctgtgagggagagcatgaggactcaagagaggactccctgctggactcccttttcgttgttgaagggcatgg |
110 |
Q |
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| T |
49304981 |
cacagaccctgcaggatataatccatggctgtgagggagagcatgaggactcaagagaggactccctgctggactcccttttcgttgttgaagggcatgg |
49305080 |
T |
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| Q |
111 |
atctgccttaggccctcttcatgaatacgagatattgtttccaactctttcattgatagagcctccagaccagcaccatataatggggcatgtcgtgaca |
210 |
Q |
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| T |
49305081 |
atctgccttaggccctcttcatgaatacgagatattgtttccaactctttcattgatagagcctccagaccagcaccatataatggggcatgtcgtgaca |
49305180 |
T |
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| Q |
211 |
tttcctcctggagcgaggcctcaagggtgtgaatatattgctgcaaaggaaaaacaaagcattaaccaaccaaattaatctctggaatatgatcattaag |
310 |
Q |
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| T |
49305181 |
tttcctcctggagcgaggcctcaagggtgtgaatatattgctgcaaaagaaaaacaaagcattaaccaaccaaattaatctctggaatatgatcattaag |
49305280 |
T |
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| Q |
311 |
accaatactttgcagatacaagaaaaccacacacaacgacatcaatgttcaaaaataaaaatagacattgtacatcaatcttgcccgttaaacaaaatac |
410 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49305281 |
accaatactttgcacatacaagaaaactacacacaacgacatcaatgttcaaaaataaaaatagacattgtacatcaatcttgcccgttaaacaaaatac |
49305380 |
T |
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| Q |
411 |
tactataagatgatgtccatc |
431 |
Q |
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|||||||||||||| |||||| |
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| T |
49305381 |
tactataagatgatttccatc |
49305401 |
T |
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