View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12616_high_3 (Length: 334)
Name: NF12616_high_3
Description: NF12616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12616_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 6 - 312
Target Start/End: Original strand, 43366624 - 43366927
Alignment:
| Q |
6 |
agaagcaaagggaagatattagcaacataacaaaaaatgcatnnnnnnngaaggtgagaacattgtttgattaccggaatgtgaaatggggattgctgat |
105 |
Q |
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| T |
43366624 |
agaaacaaaaggaagatattagcaacataacaaaaaatgaataaaaa---aaggtgagaacattgtttgattaccggaatgtgaaatggggattgctgat |
43366720 |
T |
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| Q |
106 |
gagaatctaaacgagatttaaccaaatcattatcctgaaatacaatcaaagttacacacagcagcagaatggaatgaggaatgtaattgaagtagaagga |
205 |
Q |
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| T |
43366721 |
gagaatctaaacgagatttaaccaaatcattatcctgaaatacaatcaaagttacacacagcagcaaaatggaatgaggaatgtaattgaagtagaagga |
43366820 |
T |
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| Q |
206 |
tgaagagcatttacaataaaaggggaaggagcgaagagagagagcatgatgaaaagaaggagaaggcagacggagatggcggaaatgaggaggcggtgaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| |
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| T |
43366821 |
tgaagagcatttacaataaaaggggaaggagcgaagagagagagcatgatgaaaagaaagagaaggcagacggagatggaggaaatgaggaggcgatgaa |
43366920 |
T |
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| Q |
306 |
tgagacg |
312 |
Q |
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||||||| |
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| T |
43366921 |
tgagacg |
43366927 |
T |
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