View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12616_high_5 (Length: 307)
Name: NF12616_high_5
Description: NF12616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12616_high_5 |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: scaffold0267 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 23 - 300
Target Start/End: Complemental strand, 23756 - 23479
Alignment:
| Q |
23 |
tgccccattttgctttatcctcaacatctttcaccatgcctgtgaacttttgcatgtcacatatacaaccaaaagtatttttctcaaaaaacatcaggag |
122 |
Q |
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| T |
23756 |
tgccccattttgctttatcctcaacatctttcaccatgcctgtgaacttttgcatgtcacatatacaaccagaagtatttttctcaaaaaacatcaggag |
23657 |
T |
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| Q |
123 |
ctccatttcgtcaattgcatttacgtttgggtgaaacacatcaacactcaagggaagcttctcaagttccaaatgctttatctcagcaccagagccaaac |
222 |
Q |
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| T |
23656 |
ctccatttcgtcaattgcatttacgtttgggtgaaacacatcaacactcaagggaagcttctcaagttccaaatgctttatctcagcaccagagccaaac |
23557 |
T |
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| Q |
223 |
atagccacgggtgatgaggaaccaaacccatgatacaaacatttttccatacattcagtgtgtaacctcttcttctca |
300 |
Q |
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| T |
23556 |
atagccacgggtgatgaggaaccaaacccatgatacaaacatttttccatacattcagtgtgtaacctcttcttctca |
23479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 23 - 300
Target Start/End: Complemental strand, 3879844 - 3879567
Alignment:
| Q |
23 |
tgccccattttgctttatcctcaacatctttcaccatgcctgtgaacttttgcatgtcacatatacaaccaaaagtatttttctcaaaaaacatcaggag |
122 |
Q |
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| T |
3879844 |
tgccccattttgctttatcctcaacatctttcaccatgcctgtgaacttttgcatgtcacatatacaaccagaagtatttttctcaaaaaacatcaggag |
3879745 |
T |
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| Q |
123 |
ctccatttcgtcaattgcatttacgtttgggtgaaacacatcaacactcaagggaagcttctcaagttccaaatgctttatctcagcaccagagccaaac |
222 |
Q |
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| T |
3879744 |
ctccatttcgtcaattgcatttacgtttgggtgaaacacatcaacactcaagggaagcttctcaagttccaaatgctttatctcagcaccagagccaaac |
3879645 |
T |
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| Q |
223 |
atagccacgggtgatgaggaaccaaacccatgatacaaacatttttccatacattcagtgtgtaacctcttcttctca |
300 |
Q |
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| T |
3879644 |
atagccacgggtgatgaggaaccaaacccatgatacaaacatttttccatacattcagtgtgtaacctcttcttctca |
3879567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 23 - 300
Target Start/End: Original strand, 39319825 - 39320103
Alignment:
| Q |
23 |
tgccccattttgctttatcctcaacatctttcaccatgcctgtgaacttttgcatgtcacatatacaaccaaaagtatttttctcaaaaaacatcaggag |
122 |
Q |
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||||||| ||| || ||||||||||||| ||||||||||| | |||||| | || ||||||||||||| | ||||| ||||| |||||||||||||| |
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| T |
39319825 |
tgccccacttttctctatcctcaacatccttcaccatgccagggaacttgtacactgcacatatacaacctgaggtattcttctccaaaaacatcaggag |
39319924 |
T |
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| Q |
123 |
ctccatttcgtcaattgcatttacgttt-gggtgaaacacatcaacactcaagggaagcttctcaagttccaaatgctttatctcagcaccagagccaaa |
221 |
Q |
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|||| | || | |||| |||||| |||| |||||| |||||||||||||||| | | ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39319925 |
ctccttatcattaatttcatttatgttttgggtgacacacatcaacactcaatgaatgcttctcaagttccaaatgctttatctcagcaccagacccaaa |
39320024 |
T |
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| Q |
222 |
catagccacgggtgatgaggaaccaaacccatgatacaaacatttttccatacattcagtgtgtaacctcttcttctca |
300 |
Q |
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|| || | |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
39320025 |
caatgctataggtgatgaggaacctgacccatgatacaaacatttttccatacattcagtgcgtaacctctttttctca |
39320103 |
T |
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