View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12616_low_1 (Length: 866)
Name: NF12616_low_1
Description: NF12616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12616_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 730; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 20 - 847
Target Start/End: Complemental strand, 49705857 - 49705029
Alignment:
| Q |
20 |
gatgcaactgtcacagtccaccgatcaactatcacaaatgtggctgtggttccagaagtttctcctagacaaaatcagatcaagttaggactcgaaaata |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || | ||||||||||| ||||| |
|
|
| T |
49705857 |
gatgcaactgtcacagtccaccgatcaactatcacaaacgtggctgtggttccagaagtttctcctagacaaaatca-attaggttaggactcgtaaata |
49705759 |
T |
|
| Q |
120 |
agttaagaataacatatcaattcctgatcatcggttccgtataccatcctcaataagaatagctttctctaaacaaaaaagaataaaagccaaagtccac |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| |||| ||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
49705758 |
agttaagaataacatatcaattcctgatccttggttctgtattccatcctcaataaaaatagctttctatgaacaaaaaagaataaaagccaaagtccac |
49705659 |
T |
|
| Q |
220 |
acacctctgctctgaaattccttatcagtcttgacaaatccagcaaccaacgccctaggtaaagcttgcaaccactcgtctcgcccaagccctcgaggaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49705658 |
acacctctgctctgaaattccttatcagtcttgacaaatccagcaaccaatgccctaggtaaagcttgcaaccactcgtctcgcccaagccctcgaggaa |
49705559 |
T |
|
| Q |
320 |
gagcacacagcacatgatttagcaaattttccttagtataaacagcagcagcatttccattgtgtccatcaaagatctgtgaaccagaagaagtga-gta |
418 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49705558 |
gagcacacaacacatgatttagcaaattttccttagtataaacagcagcagcatttccattgtgtccatcaaagatctgtgaaccagaagaagtgaagta |
49705459 |
T |
|
| Q |
419 |
aaaaa-ttaaagcaatctccggacagctagctaagctattatgtcatgtagttcaaaaggagtaaatatataatctgaaattgaaatagtgaaagatacc |
517 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
49705458 |
aaaaaattaaagcaatctccggacagctagctaagctattatgtcatgtagttcaaaaggagtaaataaataatctgaaactgaaatagtgaaatatacc |
49705359 |
T |
|
| Q |
518 |
gcgaatacagaaaacgacgttgaagaattcccgggaacacgctgacaatcaatcttaattaaaaagtaatcctcccctttcttagattgagcagcttgac |
617 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
49705358 |
gcgaatacagaaaacgacgttgaagagttcccgggaacgcgctgacaatcaatcttaattaaaaagtaatcctcccctttcttagattgggcagcttgac |
49705259 |
T |
|
| Q |
618 |
caattcttacagtaggcttctccatcttctcacttttcatctctctcttaagcaatgcagcaagaggcacaagatcatgatgatgccgcctcccttcacc |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49705258 |
caattcttacagtaggcttctccatcttctcacttttcatctctctcttaagcaatgcagcaagaggcacaagatcatgatgatgccgcctcccttcacc |
49705159 |
T |
|
| Q |
718 |
ggaggccatatcttaccccaccaaagaatcctcctcttagtctcacacccaattagtccaattccaaaacacactctttctcacaagtatattagatctc |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49705158 |
ggaggccatatcttaccccaccaaagaatcctcctcttagtctcacacccaattagtccaattccaaaacacactctttctcacaagtatattagatctc |
49705059 |
T |
|
| Q |
818 |
caaaagtaaaacactcaaaagggcacacac |
847 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
49705058 |
caaaagtaaaacactcaaaagggcacacac |
49705029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 37278864 - 37278927
Alignment:
| Q |
18 |
cagatgcaactgtcacagtccaccgatcaactatcacaaatgtggctgtggttccagaagtttc |
81 |
Q |
| |
|
||||||||||||| |||||||| | ||||| |||||||| || ||||| |||||||||||||| |
|
|
| T |
37278864 |
cagatgcaactgttacagtccatccatcaataatcacaaacgtagctgtcgttccagaagtttc |
37278927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 331 - 392
Target Start/End: Original strand, 6009265 - 6009326
Alignment:
| Q |
331 |
acatgatttagcaaattttccttagtataaacagcagcagcatttccattgtgtccatcaaa |
392 |
Q |
| |
|
|||| |||||| | ||| ||||||| ||||| |||||||||| |||||||||||||||||| |
|
|
| T |
6009265 |
acattatttagaagattctccttagaataaatagcagcagcagatccattgtgtccatcaaa |
6009326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 46223707 - 46223639
Alignment:
| Q |
18 |
cagatgcaactgtcacagtccaccgatcaactatcacaaatgtggctgtggttccagaagtttctccta |
86 |
Q |
| |
|
|||||||||| || || ||||| | ||||||||| |||||||| ||||| |||||||||||||| |||| |
|
|
| T |
46223707 |
cagatgcaacagtgacggtccatccatcaactataacaaatgtagctgttgttccagaagtttccccta |
46223639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University