View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12616_low_10 (Length: 232)
Name: NF12616_low_10
Description: NF12616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12616_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 30275755 - 30275541
Alignment:
| Q |
1 |
tacattattaaacattactgatgtgttttgattttctgtttagctttataaaagaagcatttaacagttgatacaccacatttatgttggtctaatctct |
100 |
Q |
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| T |
30275755 |
tacattattaaacattactgatgtgttttgattttctgtttagctttataaaagaagcatttaacagttgatacaccacatttatgttggtctaatctct |
30275656 |
T |
|
| Q |
101 |
aatgtgatactataatttaatgttgaacgtcgtttctacttaataactaaacacagcagattgtaaattgtaacgaacataaattatttttaagaactta |
200 |
Q |
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| T |
30275655 |
attgtgatactataatttaatgttgaacgtcgtttctacttaataactaaacacagcagattgtaaattgtaacgaacataaattatttttaagaactta |
30275556 |
T |
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| Q |
201 |
tcctcttgagttgca |
215 |
Q |
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|||||||| |||||| |
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| T |
30275555 |
tcctcttgcgttgca |
30275541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 4 - 215
Target Start/End: Complemental strand, 7779063 - 7778852
Alignment:
| Q |
4 |
attattaaacattactgatgtgttttgattttctgtttagctttataaaagaagcatttaacagttgatacaccacatttatgttggtctaatctctaat |
103 |
Q |
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| T |
7779063 |
attattaaacattactgatgtgttttgattttctgtttagctttatcaaagaagcatttaacagttgatacaccgcatttatgtcggtctaatctctaat |
7778964 |
T |
|
| Q |
104 |
gtgatactataatttaatgttgaacgtcgtttctacttaataactaaacacagcagattgtaaattgtaacgaacataaattatttttaagaacttatcc |
203 |
Q |
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| T |
7778963 |
ctgatactataacttaatgttgaacgttgtttctacttaacaactaaacacaacagattgtaaattgtaactaacataaattatttttaagaccttatac |
7778864 |
T |
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| Q |
204 |
tcttgagttgca |
215 |
Q |
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| T |
7778863 |
tcttgcgttgca |
7778852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 28843245 - 28843301
Alignment:
| Q |
20 |
gatgtgttttgattttctgtttagctttataaaagaagcatttaacagttgatacac |
76 |
Q |
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|||||||||| || || ||||||| ||||||||||| | | |||||||||||||||| |
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| T |
28843245 |
gatgtgttttaatattatgtttagatttataaaagaggtacttaacagttgatacac |
28843301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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