View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12616_low_2 (Length: 603)
Name: NF12616_low_2
Description: NF12616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12616_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 18 - 587
Target Start/End: Complemental strand, 30276299 - 30275732
Alignment:
| Q |
18 |
ggaacaaataatttgcagtgggaagattcatcaatgaatgacatatatatcagaaagcttgctaggtttgtgttttctaagatctcacaagcgaccaaga |
117 |
Q |
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| T |
30276299 |
ggaacaaataattttcagtgggaagattcatcaatgaatgagatatatatcagaaagcttgctaggtttgtgttttctaagatctcacaagcggccaaga |
30276200 |
T |
|
| Q |
118 |
gctttgtgatgttatgtggagaaacttctgcttatgcctcagaacttatgttgtggtcatatgaagaaacaatgtcatttattacttgttttgagaaatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30276199 |
gctttgtgatgttatgtggagaaacttctgcttatgcctcagaacttatgttgtggtcatatgaagaaacaatgtcatttattacttgttttgagaaatt |
30276100 |
T |
|
| Q |
218 |
tgttaaatccacatcagaagtaagtgttggtttgtcctctgccataaaggctgcgaagtttgcagtcatgtattgttctttgttagaagatcagaaatta |
317 |
Q |
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| T |
30276099 |
tgttaaatccacatcagaagtatgtgttggtttgtcctctgccataaaggctgcgaagtttgcagtcatgtattgttctttgttagaagatcagaaatta |
30276000 |
T |
|
| Q |
318 |
atgctgctgccatacttggtaaatcaactctttccttgcattgaagaggttttgaatacacacataaaccactttaagaaagtgattcctatattctcaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275999 |
atgctgctgccatacttggtaaatcaactctttccttgcattgaagaggttttgaatacacacataaaccactttaagaaagtgattcctatattctcaa |
30275900 |
T |
|
| Q |
418 |
taagtgattcttggattttagagaaataccttgtgtctggagtgtttggcggagctgggtcttcaaccgaacaacctgattattgtctgctaacttctag |
517 |
Q |
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| T |
30275899 |
taagtgattcttggattttagagaaataccttgtgtctggagtgtttggcggagctgggtcttcaaccgaacaacctgattattgtctgctaacttctag |
30275800 |
T |
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| Q |
518 |
tggccggaaggttctgacactattacaggtgtgttcataattaccatacattattaaacattactgatgt |
587 |
Q |
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| T |
30275799 |
tggccggaaggttctgacactattacaggtgtgttc--aattaccatacattattaaacattactgatgt |
30275732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 177 - 587
Target Start/End: Complemental strand, 7779440 - 7779043
Alignment:
| Q |
177 |
tatgaagaaacaatgtcatttattacttgttttgagaaatttgttaaatccacatcagaagtaagtgttggtttgtcctctgccataaaggctgcgaagt |
276 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||| ||||||||| || |
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| T |
7779440 |
tatgaagaaacaatgtcatttattacttgttttgacaa-tttgttaaatgcacatcagaagtaagtgttggtttgtcctatgccataaatt-------gt |
7779349 |
T |
|
| Q |
277 |
ttgcagtcatgtattgttctttgttagaagatcagaaattaatgctgctgccatacttggtaaatcaactctttccttgcattgaagaggttttgaatac |
376 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||| |||||||||| |
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| T |
7779348 |
ttgcagtcatggattgttct--gttagaagatcagaaattaatgctgctaccatacttggtaaagcatctctttccttgcattgaagag-ttttgaatac |
7779252 |
T |
|
| Q |
377 |
acacataaaccactttaagaaagtgattcctatattctcaataagtgattcttggattttagagaaataccttgtgtctggagtgtttggcggagctggg |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7779251 |
acacataaaccactttaagaaagtgattcctatattctcagtaagtgattcttggattttagagaaataccttgtgtctggagtgtttggcggagctgga |
7779152 |
T |
|
| Q |
477 |
tcttcaaccgaacaacctgattattgtctgctaacttctagtggccggaaggttctgacactattacaggtgtgttcataattaccatacattattaaac |
576 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
7779151 |
tcttcaaaagaacaacctgattattgtctgctaacttctagtggccagaacgttctgacactattacaggtgtgttc--aattaccatatattattaaac |
7779054 |
T |
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