View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12616_low_6 (Length: 319)
Name: NF12616_low_6
Description: NF12616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12616_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 121 - 306
Target Start/End: Original strand, 32156977 - 32157162
Alignment:
| Q |
121 |
gaattattaggaattacaagtaagtcatcttgaatctgtgtcctctttatatcaattatggaagctccatccaatgcttgagaaatgatcgaagtgtcgt |
220 |
Q |
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| T |
32156977 |
gaattattaggaattacaagtaagtcatcttgaatttgtgtcctctttatatcaattatggaagctccatccaatgcttgagaaatgagccaagtgtcgt |
32157076 |
T |
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| Q |
221 |
cgaatttgaactctgtgatagggtcagcaggaaaatccaattcaatataagatacatccttagctttaccattttgcaaattcttc |
306 |
Q |
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| T |
32157077 |
cgaatttgaactctgtgatagggtcagcaggaaaatccaattcaatataagatacatccttggctttaccattttgcaaattcttc |
32157162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 32156836 - 32156930
Alignment:
| Q |
19 |
ataagcttcataatgttctatatgcacatattgcaaaaaatattcaatctgttttttcaaatacattttcaaaaacttcaaataacatcttctct |
113 |
Q |
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| T |
32156836 |
ataagcttcataatgttctatatgcacatattgcaaaaaatattcaatctgttttttcaaatacattttcaaaaacttcaaataacatcttctct |
32156930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 269
Target Start/End: Complemental strand, 27359498 - 27359355
Alignment:
| Q |
126 |
attaggaattacaagtaagtcatcttgaatctgtgtcctctttatatcaattatggaagctccatccaatgcttgagaaatgatcgaagtgtcgtcgaat |
225 |
Q |
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| T |
27359498 |
attaggaattacaagtatgttatcttgaatcagtgtcctctttatatcaattatagaagcaccacccaatgcttcagaaatgagtgaagtatcatcaaaa |
27359399 |
T |
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| Q |
226 |
ttgaactctgtgatagggtcagcaggaaaatccaattcaatata |
269 |
Q |
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| T |
27359398 |
ttgagttcagtaatagggtccactggaaaatccaattctatata |
27359355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 303
Target Start/End: Original strand, 32167637 - 32167781
Alignment:
| Q |
159 |
tgtcctctttatatcaattatggaagctccatccaatgcttgagaaatgatcgaagtgtcgtcgaatttgaactctgtgatagggtcagcaggaaaatcc |
258 |
Q |
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| T |
32167637 |
tgtcctctttatatcaataatggaagcaccattcaatgctccagaaatgagtgaagtgtcattagaattgaattctgcaatagggtcagcaggaaaatcc |
32167736 |
T |
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| Q |
259 |
aattcaatataagatacatccttagctttaccattttgcaaattc |
303 |
Q |
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| T |
32167737 |
aattcaatataaaatccaaccggagcttcaccgttctgcaaattc |
32167781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 27348471 - 27348539
Alignment:
| Q |
129 |
aggaattacaagtaagtcatcttgaatctgtgtcctctttatatcaattatggaagctccatccaatgc |
197 |
Q |
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| T |
27348471 |
aggaattacaagtaaatcatctgcaaattctgtcctcttcatatcaataatggaagcaccattcaatgc |
27348539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 308
Target Start/End: Complemental strand, 44291441 - 44291261
Alignment:
| Q |
128 |
taggaattacaagtaagtcatcttgaatctgtgtcctctttatatcaattatggaagctccatccaatgcttgagaaatgatcgaagtgtcgtcgaattt |
227 |
Q |
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| T |
44291441 |
taggaattacaatcaagtcatcttgaatctctgtcctcttcacatcaacaatggaagcctcactcaatactccagaaataagtgaaatatcatcaaattt |
44291342 |
T |
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| Q |
228 |
gaactctgtgatagggtcagcaggaaaatccaattcaatataagatacatccttagctttaccattttgcaaattcttcat |
308 |
Q |
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| T |
44291341 |
tagttctgaaattgggtcagcaggaaaatccaattcaacataaaatacatccttagcttcatggttttggaaattcttcat |
44291261 |
T |
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