View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12616_low_9 (Length: 247)
Name: NF12616_low_9
Description: NF12616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12616_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 6155974 - 6156206
Alignment:
| Q |
1 |
catatagatagatcaaaggcatgatagcatgtcaatgcttttgtaatgaaagatgttttactctcaatagttttttacactcttcaaaacagtatagaat |
100 |
Q |
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| T |
6155974 |
catatagatagatcaaagacatgatagcatgtcaatgcttttgtaatgaaagatgttttactctcaatagttttttacactcttcaaaacagtatagaat |
6156073 |
T |
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| Q |
101 |
aatatatgatgaatttaaaaggaatcaccaacatgcaaatggtaagacatatatacaaactaaatttttacccataacattaagtgtcgctctcctgctc |
200 |
Q |
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| T |
6156074 |
aatatatgatgaatttaaaagggatcaccaacatgcaaatggcaagacatatatacaaactaaatttttacccatgacattaagtgtcgctctcctgctc |
6156173 |
T |
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| Q |
201 |
ttctacgattatctagtgctctacgtccagtga |
233 |
Q |
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| T |
6156174 |
ttctacgattatctagtgctctacgtccagtga |
6156206 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 54031526 - 54031567
Alignment:
| Q |
98 |
aataatatatgatgaatttaaaaggaatcaccaacatgcaaa |
139 |
Q |
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| T |
54031526 |
aataatatatgatgaatcaaaatggaatcaccaacatgcaaa |
54031567 |
T |
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