View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12617_high_1 (Length: 750)

Name: NF12617_high_1
Description: NF12617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12617_high_1
NF12617_high_1
[»] chr8 (2 HSPs)
chr8 (15-730)||(13046905-13047620)
chr8 (692-734)||(32688732-32688774)
[»] chr5 (6 HSPs)
chr5 (18-139)||(41422965-41423086)
chr5 (674-734)||(20013895-20013955)
chr5 (676-734)||(41422225-41422283)
chr5 (676-734)||(14672316-14672374)
chr5 (676-734)||(41423387-41423445)
chr5 (675-734)||(17900175-17900233)
[»] chr4 (7 HSPs)
chr4 (15-139)||(30100922-30101046)
chr4 (624-734)||(30101326-30101436)
chr4 (371-627)||(29404818-29405066)
chr4 (674-734)||(52038914-52038974)
chr4 (676-734)||(13417600-13417658)
chr4 (676-734)||(48367387-48367445)
chr4 (676-734)||(56331690-56331748)
[»] chr3 (4 HSPs)
chr3 (15-139)||(30575226-30575350)
chr3 (624-734)||(6529261-6529372)
chr3 (624-734)||(30574839-30574945)
chr3 (676-734)||(30576021-30576079)
[»] chr7 (4 HSPs)
chr7 (624-734)||(15743255-15743365)
chr7 (15-139)||(15742850-15742974)
chr7 (676-734)||(15742096-15742154)
chr7 (676-734)||(23118309-23118367)
[»] chr1 (8 HSPs)
chr1 (624-734)||(28876514-28876624)
chr1 (15-139)||(28876109-28876233)
chr1 (15-139)||(51837082-51837206)
chr1 (638-734)||(51837532-51837628)
chr1 (676-734)||(37810817-37810875)
chr1 (676-734)||(28875335-28875393)
chr1 (676-734)||(44031803-44031861)
chr1 (624-666)||(51837487-51837529)
[»] chr6 (7 HSPs)
chr6 (15-139)||(1573402-1573526)
chr6 (624-734)||(1573011-1573121)
chr6 (676-734)||(11381399-11381457)
chr6 (376-506)||(6429262-6429389)
chr6 (376-506)||(12839864-12839994)
chr6 (676-734)||(1574222-1574280)
chr6 (676-734)||(29657203-29657261)
[»] chr2 (3 HSPs)
chr2 (676-734)||(4518762-4518820)
chr2 (676-734)||(44112623-44112681)
chr2 (676-727)||(44113183-44113234)


Alignment Details
Target: chr8 (Bit Score: 602; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 15 - 730
Target Start/End: Original strand, 13046905 - 13047620
Alignment:
Q  15 ctgtggaagatgacagaaaaacacaatgaaccggtcttaaagaagaccatcagcgatggagaaggaaggtacatcaacgaaatttcaccttcgtcggaaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13046905 ctgtggaagatgacagaaaaacacaatgaaccggtcttaaagaagaccatcaacgatggagaaggaaggtacatcaacgaaatttcaccttcgtcggaaa 13047004  T
Q  115 agatcattgatgcagaaatggagaagaacaaagaggtaacgaagaaaaattgcgaagaaaagagtgggggtcggggaagtgtagttaatgaagcgataag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13047005 agatcattgatgcagaaatggagaagaacaaagaggtaacgaagaaaaatcacgaagaaaagagtgggggtcggggaagtgtagttaatgaagcgataag 13047104  T
Q  215 tgttggnnnnnnngagcagaaccagtcacaaggcagcgagaaaagaagatcaagtttgcaggatcgaacctcaactgctgccggaacaacaaannnnnnn 314  Q
    ||||||       ||| ||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| |||||||||||||            
T  13047105 tgttggaaaaaaagagaagaaccagtcacaaggcagtgagaaaagcagaccaagttggcaggatcgaacctcaactgccgccggaacaacaatttttttt 13047204  T
Q  315 acacgatgccaaaaaagtcagattcatcacaaaaaatcttccaccatacaaaagacatgcacgacaagttggactctaaaatgttttccagattttttgt 414  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13047205 acatgatgccaaaaaagtcagattcatcacaaaaaatcttccaccatacaaaagacatgcatgacaagttggactctaaaatgttttccagattttttgt 13047304  T
Q  415 gcatcgacaatggcaactactagaacttctcaatcaaaagcacttcatcaattttggcatcaaattctatggaggtttggcgttgtactgattagtgcct 514  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  13047305 gcattgacaatggcaactactggaacttctcaatcaaaagcacttcatcaatttcggcatcaaattctatggaggtttggcgttgtcctgattagtgcct 13047404  T
Q  515 tttcggttattatagaaactattgattttctgattacagttctggaaaagatacaaaaggccacttatgcatgtcattgcttggaagaataaactagtac 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13047405 tttcggttattatagaaactattgattttctgattacagttctggaaaagatacaaaaggccacttatgcatgtcattgcttggaagaataaactagtac 13047504  T
Q  615 cgaagaatcagtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgat 714  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13047505 cgaagaatcagtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcgggtggtattgatagggtaattgctgat 13047604  T
Q  715 gcggttagttatttta 730  Q
    || |||||||||||||    
T  13047605 gcagttagttatttta 13047620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 692 - 734
Target Start/End: Complemental strand, 32688774 - 32688732
Alignment:
Q  692 gtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    ||||||||||||||| ||||||||| || ||||||||||||||    
T  32688774 gtattgatagggtaactgctgatgcagtcagttattttaatat 32688732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 6e-36; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 41422965 - 41423086
Alignment:
Q  18 tggaagatgacagaaaaacacaatgaaccggtcttaaagaagaccatcagcgatggagaaggaaggtacatcaacgaaatttcaccttcgtcggaaaaga 117  Q
    ||||||||||||||||||||| ||||||| || ||| |||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||     
T  41422965 tggaagatgacagaaaaacacgatgaaccagtattagagaagatcatcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcgtcggaaaagg 41423064  T
Q  118 tcattgatgcagaaatggagaa 139  Q
    |  |||||||||||||||||||    
T  41423065 ttgttgatgcagaaatggagaa 41423086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 674 - 734
Target Start/End: Complemental strand, 20013955 - 20013895
Alignment:
Q  674 aatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    |||||||||| || |||||||||||||||||||||||||||||  | ||||||||||||||    
T  20013955 aatgttaggtatcgggtggtattgatagggtaattgctgatgcaatcagttattttaatat 20013895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 676 - 734
Target Start/End: Original strand, 41422225 - 41422283
Alignment:
Q  676 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    |||||||| || ||||||||||||||||||| ||||||||| || ||||||||||||||    
T  41422225 tgttaggtatctggtggtattgatagggtaactgctgatgcagtaagttattttaatat 41422283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 676 - 734
Target Start/End: Original strand, 14672316 - 14672374
Alignment:
Q  676 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  14672316 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatat 14672374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 676 - 734
Target Start/End: Complemental strand, 41423445 - 41423387
Alignment:
Q  676 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    |||||||| || ||||||||||||||||||| |||||| || || ||||||||||||||    
T  41423445 tgttaggtatctggtggtattgatagggtaactgctgacgcagtcagttattttaatat 41423387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 734
Target Start/End: Complemental strand, 17900233 - 17900175
Alignment:
Q  675 atgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    ||||||||| || ||||||||||| ||||||| ||||||||| || ||||||||||||||    
T  17900233 atgttaggtatcgggtggtattga-agggtaactgctgatgcagtcagttattttaatat 17900175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 30100922 - 30101046
Alignment:
Q  15 ctgtggaagatgacagaaaaacacaatgaaccggtcttaaagaagaccatcagcgatggagaaggaaggtacatcaacgaaatttcaccttcgtcggaaa 114  Q
    |||||||||||| ||||||||||| ||||||| || ||| |||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  30100922 ctgtggaagatggcagaaaaacacgatgaaccagtattagagaagatcatcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcgtcggaaa 30101021  T
Q  115 agatcattgatgcagaaatggagaa 139  Q
    || |  |||||||||||||||||||    
T  30101022 aggttgttgatgcagaaatggagaa 30101046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 624 - 734
Target Start/End: Original strand, 30101326 - 30101436
Alignment:
Q  624 agtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagt 723  Q
    |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||| | ||||||||| || |||    
T  30101326 agtttctttaactcagccttgaggacaaggctgtttttctagcggtcggtaatgttaggtatccggtggtattgatagggtgactgctgatgcagtcagt 30101425  T
Q  724 tattttaatat 734  Q
    |||||||||||    
T  30101426 tattttaatat 30101436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 371 - 627
Target Start/End: Complemental strand, 29405066 - 29404818
Alignment:
Q  371 atgcacgacaagttggactctaaaatgttttccagattttttgtgcatcgacaatggcaactactagaacttctcaatcaaaagcacttcatcaattttg 470  Q
    ||||||| ||||||||||||| ||||||||| ||||||| | |||| | || ||||||||||||| |   ||| ||||||| || ||||||| ||||| |    
T  29405066 atgcacggcaagttggactctcaaatgtttttcagatttctcgtgctttgataatggcaactact-ggctttcccaatcaatagaacttcattaatttcg 29404968  T
Q  471 gcatcaaattctatggaggtttggcgttgtactgat--tagtgccttttcggttattatagaaactattgattttctgattacagttctggaaaagatac 568  Q
    | | | |||||| ||||| |||||| |||| |||||  ||| ||    | ||||||||||| ||||||||||||  ||||||||  ||| |||||||       
T  29404967 gtaac-aattctgtggagctttggcattgtcctgataatagagc----ttggttattatagcaactattgatttgttgattaca-atctagaaaaga--- 29404877  T
Q  569 aaaaggccacttatgcatgtcattgcttggaagaataaactagtaccgaagaatcagtt 627  Q
    || || |||||  |  ||||||  ||||||||||||||||||||||| |||||||||||    
T  29404876 aacagaccactggtctatgtcaaagcttggaagaataaactagtacccaagaatcagtt 29404818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 674 - 734
Target Start/End: Complemental strand, 52038974 - 52038914
Alignment:
Q  674 aatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    |||||||||| || ||||||||||||||||||| ||||||||| || |||||||| |||||    
T  52038974 aatgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttatttaaatat 52038914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 676 - 734
Target Start/End: Original strand, 13417600 - 13417658
Alignment:
Q  676 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    |||||||| || ||||||||||||||||||| ||||||||  || ||||||||||||||    
T  13417600 tgttaggtatcgggtggtattgatagggtaactgctgatgtagtaagttattttaatat 13417658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 676 - 734
Target Start/End: Original strand, 48367387 - 48367445
Alignment:
Q  676 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  48367387 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatat 48367445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 676 - 734
Target Start/End: Original strand, 56331690 - 56331748
Alignment:
Q  676 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    |||||||| || ||||||||||||||||||| ||||||||| ||  |||||||||||||    
T  56331690 tgttaggtatctggtggtattgatagggtaactgctgatgcagtcggttattttaatat 56331748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 30575350 - 30575226
Alignment:
Q  15 ctgtggaagatgacagaaaaacacaatgaaccggtcttaaagaagaccatcagcgatggagaaggaaggtacatcaacgaaatttcaccttcgtcggaaa 114  Q
    |||||||||||||||||||||||| ||||||| || ||| |||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  30575350 ctgtggaagatgacagaaaaacacgatgaaccagtattagagaagatcatcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcgtcggaaa 30575251  T
Q  115 agatcattgatgcagaaatggagaa 139  Q
    || |  |||||||| ||||||||||    
T  30575250 aggttgttgatgcaaaaatggagaa 30575226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 624 - 734
Target Start/End: Complemental strand, 6529372 - 6529261
Alignment:
Q  624 agtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgc-tgatgcggttag 722  Q
    |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||||| ||| ||||||  | ||    
T  6529372 agtttctttaactcagccttgaggacaaggctgtttttctagcggtcggtaatgttaggtatccggtggtattgatagggtaactgcttgatgcaatcag 6529273  T
Q  723 ttattttaatat 734  Q
    ||||||||||||    
T  6529272 ttattttaatat 6529261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 624 - 734
Target Start/End: Complemental strand, 30574945 - 30574839
Alignment:
Q  624 agtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagt 723  Q
    |||||||||| |||||||||||||||||| ||||||||||||    ||| |||||| ||| || ||||||||||||||||||| |||||| || || |||    
T  30574945 agtttctttaactcagccttgaggacaaggctgtttttctag----cggaaatgtttggtatctggtggtattgatagggtaactgctgacgcagtcagt 30574850  T
Q  724 tattttaatat 734  Q
    |||||||||||    
T  30574849 tattttaatat 30574839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 676 - 734
Target Start/End: Complemental strand, 30576079 - 30576021
Alignment:
Q  676 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    |||||||| || ||||||||||||||||||| |||||| || || ||||||||||||||    
T  30576079 tgttaggtatctggtggtattgatagggtaactgctgacgcagtcagttattttaatat 30576021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 4e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 624 - 734
Target Start/End: Original strand, 15743255 - 15743365
Alignment:
Q  624 agtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagt 723  Q
    |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||| | ||||||||| || |||    
T  15743255 agtttctttaactcagccttgaggacaaggctgtttttctagcggtcggtaatgttaggtatccggtggtattgatagggtgactgctgatgcagtcagt 15743354  T
Q  724 tattttaatat 734  Q
    |||||||||||    
T  15743355 tattttaatat 15743365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 15742850 - 15742974
Alignment:
Q  15 ctgtggaagatgacagaaaaacacaatgaaccggtcttaaagaagaccatcagcgatggagaaggaaggtacatcaacgaaatttcaccttcgtcggaaa 114  Q
    |||||||||||| ||||||||||| ||||||| || ||| |||||| ||||| ||||||||||||||||||| |||| |||||||||||||| |||||||    
T  15742850 ctgtggaagatggcagaaaaacacgatgaaccagtattagagaagatcatcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcttcggaaa 15742949  T
Q  115 agatcattgatgcagaaatggagaa 139  Q
    || |  |||||||||||||||||||    
T  15742950 aggttgttgatgcagaaatggagaa 15742974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 676 - 734
Target Start/End: Original strand, 15742096 - 15742154
Alignment:
Q  676 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  15742096 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatat 15742154  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 676 - 734
Target Start/End: Original strand, 23118309 - 23118367
Alignment:
Q  676 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    |||||||| || ||||||||| ||||||||| ||||||| | |||||||||||||||||    
T  23118309 tgttaggtatcgggtggtattcatagggtaactgctgatccagttagttattttaatat 23118367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 4e-34; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 624 - 734
Target Start/End: Original strand, 28876514 - 28876624
Alignment:
Q  624 agtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagt 723  Q
    |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||| | ||||||||| || |||    
T  28876514 agtttctttaactcagccttgaggacaaggctgtttttctagcggtcggtaatgttaggtatccggtggtattgatagggtgactgctgatgcagtcagt 28876613  T
Q  724 tattttaatat 734  Q
    |||||||||||    
T  28876614 tattttaatat 28876624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 28876109 - 28876233
Alignment:
Q  15 ctgtggaagatgacagaaaaacacaatgaaccggtcttaaagaagaccatcagcgatggagaaggaaggtacatcaacgaaatttcaccttcgtcggaaa 114  Q
    |||||||||||| ||||||||||| ||||||| || ||| |||||| ||||| ||||||||||||||||||| |||| |||||||||||||| |||||||    
T  28876109 ctgtggaagatggcagaaaaacacgatgaaccagtattagagaagatcatcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcttcggaaa 28876208  T
Q  115 agatcattgatgcagaaatggagaa 139  Q
    || |  |||||||||||||||||||    
T  28876209 aggttgttgatgcagaaatggagaa 28876233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 51837082 - 51837206
Alignment:
Q  15 ctgtggaagatgacagaaaaacacaatgaaccggtcttaaagaagaccatcagcgatggagaaggaaggtacatcaacgaaatttcaccttcgtcggaaa 114  Q
    |||||||||||| ||||||||||| ||||||| || ||| |||||| ||||| ||||||||||||||||||| |||| |||||||||||||| |||||||    
T  51837082 ctgtggaagatggcagaaaaacacgatgaaccagtattagagaagatcatcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcttcggaaa 51837181  T
Q  115 agatcattgatgcagaaatggagaa 139  Q
    || |  |||||||||||||||||||    
T  51837182 aggttgttgatgcagaaatggagaa 51837206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 638 - 734
Target Start/End: Original strand, 51837532 - 51837628
Alignment:
Q  638 agccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    ||||||||||||||  ||||||||||||  |||||| ||||||||| || ||||| ||||||||||| | ||||||||| || ||||||||||||||    
T  51837532 agccttgaggacaacgctgtttttctagaggtcggtgatgttaggtatccggtggcattgatagggtgactgctgatgcagtcagttattttaatat 51837628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 676 - 734
Target Start/End: Original strand, 37810817 - 37810875
Alignment:
Q  676 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    |||||||| || ||||||||||||||||||| ||||||||| || ||||||||||||||    
T  37810817 tgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttattttaatat 37810875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 676 - 734
Target Start/End: Original strand, 28875335 - 28875393
Alignment:
Q  676 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  28875335 tgttaggtatctggtggtattgatagggtgactgctgatgcagtcagttattttaatat 28875393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 676 - 734
Target Start/End: Complemental strand, 44031861 - 44031803
Alignment:
Q  676 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    |||||||| || ||||||||||||||||||| ||||||||| ||  |||||||||||||    
T  44031861 tgttaggtatctggtggtattgatagggtaactgctgatgcagtcggttattttaatat 44031803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 624 - 666
Target Start/End: Original strand, 51837487 - 51837529
Alignment:
Q  624 agtttctttatctcagccttgaggacaagactgtttttctagc 666  Q
    |||||||||| |||||||||||||||||| |||||||||||||    
T  51837487 agtttctttaactcagccttgaggacaaggctgtttttctagc 51837529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 6e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 1573526 - 1573402
Alignment:
Q  15 ctgtggaagatgacagaaaaacacaatgaaccggtcttaaagaagaccatcagcgatggagaaggaaggtacatcaacgaaatttcaccttcgtcggaaa 114  Q
    |||||||||||| ||||||||||| ||||||| || ||| |||||| ||||| ||||||||||||||||||| |||| |||||||||||||| |||||||    
T  1573526 ctgtggaagatggcagaaaaacacgatgaaccagtattagagaagatcatcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcttcggaaa 1573427  T
Q  115 agatcattgatgcagaaatggagaa 139  Q
    || |  |||||||||||||||||||    
T  1573426 aggttgttgatgcagaaatggagaa 1573402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 624 - 734
Target Start/End: Complemental strand, 1573121 - 1573011
Alignment:
Q  624 agtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagt 723  Q
    |||||||||| |||||||||||||||||| ||||||||||||| | |||||||||||||| || |||| |||||||||||| | ||||||||| || |||    
T  1573121 agtttctttaactcagccttgaggacaaggctgtttttctagcggccggtaatgttaggtatccggtgatattgatagggtgactgctgatgcagtcagt 1573022  T
Q  724 tattttaatat 734  Q
    |||||||||||    
T  1573021 tattttaatat 1573011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 676 - 734
Target Start/End: Original strand, 11381399 - 11381457
Alignment:
Q  676 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    |||||||| || ||||||||||||||||||| ||||||||| || ||||||||||||||    
T  11381399 tgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttattttaatat 11381457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 376 - 506
Target Start/End: Complemental strand, 6429389 - 6429262
Alignment:
Q  376 cgacaagttggactctaaaatgttttccagattttttgtgcatcgacaatggcaactactagaacttctcaatcaaaagcacttcatcaattttggcatc 475  Q
    |||||||||||||||  ||||||||| |||||||||||||| |  | ||||| ||||||| ||| ||| ||||||| |  ||||||||||||| |||| |    
T  6429389 cgacaagttggactc--aaatgtttttcagattttttgtgctttaataatgg-aactactggaatttcccaatcaatataacttcatcaatttcggcaac 6429293  T
Q  476 aaattctatggaggtttggcgttgtactgat 506  Q
    ||||| | ||||  |||||| |||| |||||    
T  6429292 aaattttgtggacctttggcattgtcctgat 6429262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 376 - 506
Target Start/End: Complemental strand, 12839994 - 12839864
Alignment:
Q  376 cgacaagttggactctaaaatgttttccaga-ttttttgtgcatcgacaatggcaactactagaacttctcaatcaaaagcacttcatcaattttggcat 474  Q
    |||||||||||||||| ||||||||| |||| |||||| ||| | || ||||| ||||||| ||| ||| ||||||| |  ||||||| ||||| ||||     
T  12839994 cgacaagttggactctcaaatgtttttcagatttttttatgctttgataatgg-aactactggaatttcccaatcaatataacttcataaatttcggcaa 12839896  T
Q  475 caaattctatggaggtttggcgttgtactgat 506  Q
    |||||| | ||||| |||||| |||| |||||    
T  12839895 caaattttgtggagctttggcattgtcctgat 12839864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 676 - 734
Target Start/End: Complemental strand, 1574280 - 1574222
Alignment:
Q  676 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  1574280 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatat 1574222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 676 - 734
Target Start/End: Original strand, 29657203 - 29657261
Alignment:
Q  676 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    |||||||| || ||||||||||||||||||| |||| |||| || ||||||||||||||    
T  29657203 tgttaggtatccggtggtattgatagggtaactgctaatgcagtcagttattttaatat 29657261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 676 - 734
Target Start/End: Original strand, 4518762 - 4518820
Alignment:
Q  676 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    |||||||| || ||||||||||||||||||| |||||| || || ||||||||||||||    
T  4518762 tgttaggtatctggtggtattgatagggtaactgctgacgcagtcagttattttaatat 4518820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 676 - 734
Target Start/End: Original strand, 44112623 - 44112681
Alignment:
Q  676 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 734  Q
    |||||||| || ||||| ||||||||||||| ||||||||| || ||||||||||||||    
T  44112623 tgttaggtatccggtgggattgatagggtaactgctgatgcagtcagttattttaatat 44112681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 727
Target Start/End: Complemental strand, 44113234 - 44113183
Alignment:
Q  676 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttatt 727  Q
    |||||||| || ||||||||||||||||||| ||||||||| || |||||||    
T  44113234 tgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttatt 44113183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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