View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12617_high_5 (Length: 355)
Name: NF12617_high_5
Description: NF12617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12617_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 29503988 - 29503661
Alignment:
| Q |
11 |
acatcaacaaaattggatacataataactttaaaattttgctaaaacaaaattatgatataatcatttagatctactaccatctgtacnnnnnnntttct |
110 |
Q |
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| T |
29503988 |
acatcaacaaaattggatacataataactttaaaattttgctaaaacaaaattatgatataatcatttagatctactagcatctgtacaaaaaaatttct |
29503889 |
T |
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| Q |
111 |
tgaattttgggtaatgaagttggatagagaaatattttggccatacacgtggcatgatatgagtgaacactagaaacaagaaagccagccaatgcaaaac |
210 |
Q |
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| T |
29503888 |
tgaattttgggtaatgaagttggatagagaaatattttggccatacacgtggcatgatatgagtgaacactagaaacaagaaagccagccaatgcaaaac |
29503789 |
T |
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| Q |
211 |
agttacagcatcacagtcaccaattaagaaacaaagtactatgttgttgtatttgtaatgaaaaaacatgttttatgtacctgtgaaacatgttttttga |
310 |
Q |
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| T |
29503788 |
agttacagcatcacagtcaccaattaagaaacaaa-------------gtatttgtaatgaaaaaacatgttttatgtacctgtgaaacatgttttttga |
29503702 |
T |
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| Q |
311 |
tgttggtaccaggaagatctttaggcaaatctctgcttctc |
351 |
Q |
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| T |
29503701 |
tgttggtaccaggaagatctttaggcaaatctctgattctc |
29503661 |
T |
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