View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12617_high_6 (Length: 320)
Name: NF12617_high_6
Description: NF12617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12617_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 38217892 - 38217576
Alignment:
| Q |
1 |
tagttgtgacctctcacatgaattcaaacatataaaggtcaagagctagacagaccactaggcagaggcagtcaagcaaaagcaaattgagataaatatc |
100 |
Q |
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| T |
38217892 |
tagttgtgacctctcacatgaattcaaacatataaaggtcaagagctagacagaccactaggcagaggcagtcaagcaaaagcaaattgagataaatatc |
38217793 |
T |
|
| Q |
101 |
ttatctggttgataagtgaaaaagctattctcattaacaacacaaaagaatgtcataccattttcagaaagcacactccacggtttgcatggcatattga |
200 |
Q |
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| T |
38217792 |
ttatctggttgataagtgaaaaagctattctcattaacaacacaaaagaatgtcataccattttcagaaagcacactccacggtttgcatggcatattga |
38217693 |
T |
|
| Q |
201 |
gcgtatttccacagaggaaggcatgtctggcgcagcttctaaagcaagttcatattgtgttaatgcctcctcatactttgcatctacaaaaagtttgttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38217692 |
gcgtatttccacagaggaaggcatgtctggcgcaacttctaaagcaagttcatattgtgttaatgcctcctcatactttgcatctacaaaaagtttgttc |
38217593 |
T |
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| Q |
301 |
ccttctacctttgcttc |
317 |
Q |
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||||||||||||||||| |
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| T |
38217592 |
ccttctacctttgcttc |
38217576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 144 - 317
Target Start/End: Original strand, 21364217 - 21364390
Alignment:
| Q |
144 |
aaaagaatgtcataccattttcagaaagcacactccacggtttgcatggcatattgagcgtatttccacagaggaaggcatgtctggcgcagcttctaaa |
243 |
Q |
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||||||| | ||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||| |
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| T |
21364217 |
aaaagaaggccataccagtttcataaagcacaccgcacggtttgcatggcatattgagcgtatttccacagatgaaggcatgtctggcgcaacttgtaaa |
21364316 |
T |
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| Q |
244 |
gcaagttcatattgtgttaatgcctcctcatactttgcatctacaaaaagtttgttcccttctacctttgcttc |
317 |
Q |
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||| | |||||||| | ||| |||||||||||||| ||||||||||||||||||| |||||||| |||||||| |
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| T |
21364317 |
gcatgctcatattgcgataaagcctcctcatacttcccatctacaaaaagtttgttaccttctacttttgcttc |
21364390 |
T |
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