View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12617_low_11 (Length: 304)
Name: NF12617_low_11
Description: NF12617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12617_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 15737838 - 15737562
Alignment:
| Q |
16 |
catgttcctcagtgatgtgtgaaactgttgatagaagaaaagtacttataaaacttccaatacctaagctagtcaatgaataagaagtgccaagactctt |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15737838 |
catgttcctcagtgatgtgtgaaactgttgatagaagaaaagtacttataaaacttccaatacctaagctagtcaatgaataagaagtgccaagactctt |
15737739 |
T |
|
| Q |
116 |
catgctttctggagcttgatcatagaagaactcaattttagcaacctctatgaatgcttcagctgttcccataagtataaattgtggaagcaaaatgaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15737738 |
catgctttctggagcttgatcatagaagaactcaattttagcaacctctatgaatgcttcagctgttcccataagtataaattgtggaagcaaaatgaat |
15737639 |
T |
|
| Q |
216 |
atgctcaatggaaccaatcctccattttcaactactccatgttctttggctacactaagcctatatctttcagtgaa |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15737638 |
atgctcaatggaaccaatcctccattttcaactactccatgttctttggctacactaagcctatatctttcagtgaa |
15737562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 15730235 - 15729959
Alignment:
| Q |
16 |
catgttcctcagtgatgtgtgaaactgttgatagaagaaaagtacttataaaacttccaatacctaagctagtcaatgaataagaagtgccaagactctt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| ||||||||||||||| | ||||| |
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| T |
15730235 |
catgttcctcagtgatgtgtgaaactgttgatagaagaaaagtactaataaaatttccaatgcctaagctagtcattgaataagaagtgcccaagctctt |
15730136 |
T |
|
| Q |
116 |
catgctttctggagcttgatcatagaagaactcaattttagcaacctctatgaatgcttcagctgttcccataagtataaattgtggaagcaaaatgaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||| || || ||||||||| |
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| T |
15730135 |
catgctttctggagcttgatcatagaagaactcaattttagcaacctctaaaaatgcatcagctgttcccataagtaaaaattgagggagtaaaatgaat |
15730036 |
T |
|
| Q |
216 |
atgctcaatggaaccaatcctccattttcaactactccatgttctttggctacactaagcctatatctttcagtgaa |
292 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15730035 |
atgctcaatggaactaatcctccattttcaactactccatgttctttggctacactaagcctatatctttcagtgaa |
15729959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 27 - 265
Target Start/End: Complemental strand, 15779926 - 15779688
Alignment:
| Q |
27 |
gtgatgtgtgaaactgttgatagaagaaaagtacttataaaacttccaatacctaagctagtcaatgaataagaagtgccaagactcttcatgctttctg |
126 |
Q |
| |
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||||| |||||||||||||| ||||||||||| || | ||||| ||||| || |||| || ||||| ||| | ||||| |||||||||||||||| |
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| T |
15779926 |
gtgatatgtgaaactgttgagagaagaaaagtgctaaggaaactaccaatgcccgtagtagttaaggaatacgaactcccaaggctcttcatgctttctg |
15779827 |
T |
|
| Q |
127 |
gagcttgatcatagaagaactcaattttagcaacctctatgaatgcttcagctgttcccataagtataaattgtggaagcaaaatgaatatgctcaatgg |
226 |
Q |
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| ||||| |||||||| ||||||||||| ||| |||||| || ||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
15779826 |
gggcttggtcatagaaaaactcaattttggcaccctctaagagggcttctgctattcccataagtacaaattgtggagccaaaatgaatatgctcaatgg |
15779727 |
T |
|
| Q |
227 |
aaccaatcctccattttcaactactccatgttctttggc |
265 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||| |
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| T |
15779726 |
aacctgtcctccattttcaattactccatgttctttggc |
15779688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 93 - 280
Target Start/End: Original strand, 33411577 - 33411764
Alignment:
| Q |
93 |
gaataagaagtgccaagactcttcatgctttctggagcttgatcatagaagaactcaattttagcaacctctatgaatgcttcagctgttcccataagta |
192 |
Q |
| |
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||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||| ||||||||||||||||||| |
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| T |
33411577 |
gaatacgaagttccaatactcttcatgctttctggagcttgatcatagaaaaactcgattttcgcaacctctagaaatgcatcagctgttcccataagta |
33411676 |
T |
|
| Q |
193 |
taaattgtggaagcaaaatgaatatgctcaatggaaccaatcctccattttcaactactccatgttctttggctacactaagcctata |
280 |
Q |
| |
|
|||| || |||||||||||||| || ||||| ||||| ||||||| ||||||||| ||||||||||| || || ||||||||||| |
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| T |
33411677 |
taaactgaggaagcaaaatgaaaatactcaaaggaacttgtcctccactttcaactaaaccatgttcttttgccactctaagcctata |
33411764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 15755932 - 15755719
Alignment:
| Q |
16 |
catgttcctcagtgatgtgtgaaactgttgatagaagaaaagtacttataaaacttccaatacctaagctagtcaatgaataagaagtgccaagactctt |
115 |
Q |
| |
|
|||||| |||||||| |||||||||||||| ||||||||||| || | |||||| ||||| || |||| || ||||| || || ||||||||||| |
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| T |
15755932 |
catgtttctcagtgacatgtgaaactgttgagagaagaaaagtgctgagaaaactaccaattccagtagtagttaaggaatatgatgttccaagactctt |
15755833 |
T |
|
| Q |
116 |
catgctttctggagcttgatcatagaagaactcaattttagcaacctctatgaatgcttcagctgttcccataagtataaattgtggaagcaaaatgaat |
215 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| ||||| ||| |||||| | ||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
15755832 |
catgctttctggtgcttgatcatagaaaaactccatttttgcaccctctaaaagtgcttcagccactcccataagtataaattgtggtagcaaaatgaat |
15755733 |
T |
|
| Q |
216 |
atgctcaatggaac |
229 |
Q |
| |
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||||| |||||||| |
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| T |
15755732 |
atgcttaatggaac |
15755719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 15766799 - 15766588
Alignment:
| Q |
18 |
tgttcctcagtgatgtgtgaaactgttgatagaagaaaagtacttataaaacttccaatacctaagctagtcaatgaataagaagtgccaagactcttca |
117 |
Q |
| |
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|||| |||||||| |||||||||| ||| ||||||||||| || | |||||| ||||| || |||| ||||| || || || ||||| ||||||| |
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| T |
15766799 |
tgtttctcagtgacatgtgaaactgctgagagaagaaaagtgctgagaaaactaccaattccagtagtagttaatgagtatgatgttccaaggctcttca |
15766700 |
T |
|
| Q |
118 |
tgctttctggagcttgatcatagaagaactcaattttagcaacctctatgaatgcttcagctgttcccataagtataaattgtggaagcaaaatgaatat |
217 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||| ||| |||||| | ||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
15766699 |
tgctttctggtgcttgatcatagaaaaactccatttttgcaccctctaaaagtgcttcagccactcccataagtataaattgtggaagcaaaatgaatat |
15766600 |
T |
|
| Q |
218 |
gctcaatggaac |
229 |
Q |
| |
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||| |||||||| |
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| T |
15766599 |
gcttaatggaac |
15766588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 39222895 - 39223000
Alignment:
| Q |
43 |
ttgatagaagaaaagtacttataaaacttccaatacctaagctagtcaatgaataagaagtgccaagactcttcatgctttctggagcttgatcatagaa |
142 |
Q |
| |
|
|||| ||||| |||||||||| ||||||||| | ||| ||||| || |||| || || || ||||| ||||||| |||||| |||||||||||||| |
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|
| T |
39222895 |
ttgaaagaaggaaagtacttagaaaacttcctaaacccaagctggttgtaaaatatgatgttccgagacttttcatgccttctggtgcttgatcatagaa |
39222994 |
T |
|
| Q |
143 |
gaactc |
148 |
Q |
| |
|
|||||| |
|
|
| T |
39222995 |
gaactc |
39223000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 39193607 - 39193647
Alignment:
| Q |
108 |
agactcttcatgctttctggagcttgatcatagaagaactc |
148 |
Q |
| |
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||||| ||||||| |||||| |||||||||||||||||||| |
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|
| T |
39193607 |
agacttttcatgccttctggtgcttgatcatagaagaactc |
39193647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 39238627 - 39238667
Alignment:
| Q |
108 |
agactcttcatgctttctggagcttgatcatagaagaactc |
148 |
Q |
| |
|
|||||||||||| ||||||| |||||||| ||||||||||| |
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|
| T |
39238627 |
agactcttcatggtttctggcgcttgatcgtagaagaactc |
39238667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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