View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12617_low_13 (Length: 284)
Name: NF12617_low_13
Description: NF12617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12617_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 2963313 - 2963572
Alignment:
| Q |
1 |
aaaggaagtttgatatcgatgattagcctaaaatgttgctcttgtaattaattttttgtaaactttatgggagcaactttatgtaatcctgtaatcatga |
100 |
Q |
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| T |
2963313 |
aaaggaagtttgatatcgatgattagcctaaaatgttactcttgtaattaattttttgtaaactttatgggagcaactttatataatcctgtaatcatga |
2963412 |
T |
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| Q |
101 |
tgta-ctatgacttaatc-aaatgtataactttgaaatacgtggtattatcaatgtaaattcctatgttatcctgtatcaatgtgtaacgcttnnnnnnn |
198 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2963413 |
tgtacctatgacttaatcaaaatgtataactttgaaatacgtggtattatcaatgtaaattcctatgttatcctgtatcaatgtgtaacgctt---aaaa |
2963509 |
T |
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| Q |
199 |
nnnnnttgattgttgtttggttgttatagcaatttttagatatatacgaaaaaaggacgaaga |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2963510 |
aaaaattgattgttgtttggttgttatagcaatttttagatatatatgaaaaaaggacgaaga |
2963572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 2942627 - 2942752
Alignment:
| Q |
1 |
aaaggaagtttgatatcgatgattagcctaaaatgttgctcttgtaattaattttttgtaaactttatgggagcaactttatgtaatcctgtaatcatga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2942627 |
aaaggaagtttgatatcgatgattagcctaaaatgttactcttgtaattaattttttgtaaactttatgggagcaactttatgtaatcccttaatcatga |
2942726 |
T |
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| Q |
101 |
tgta-ctatgacttaatcaaatgtat |
125 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
2942727 |
tgtacctatgacttaatcaaatgtat |
2942752 |
T |
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