View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12617_low_17 (Length: 259)
Name: NF12617_low_17
Description: NF12617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12617_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 30487069 - 30487250
Alignment:
| Q |
12 |
gttcactgtgggagttctatataagcgtggattatattcactgttctttgtcttcagctattttgctgaatgtagaaagaaaagggctatgattacaatg |
111 |
Q |
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| T |
30487069 |
gttcattgtgggagttctatataagcgtgggttatattcactgttctttgtcttcagctattttgctgaatgtagaaagaaaagggctatgattacaatg |
30487168 |
T |
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| Q |
112 |
agagaggctttagtgggaaataccaattcaatcagaaaatcagaatctcgcctgaaattggctctaacttctttcaaaatcc |
193 |
Q |
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| T |
30487169 |
agagaggctttagtgggaaataccaattcaatcagaaaatcagaatctcgcctgaaattggctctaacttctttcaaaatcc |
30487250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 30518260 - 30518420
Alignment:
| Q |
33 |
taagcgtggattatattcactgttctttgtcttcagctattttgctgaatgtagaaagaaaagggctatgattacaatgagagaggctttagtgggaaat |
132 |
Q |
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| T |
30518260 |
taagtgtgggttatattcactgttcttcgccttcagctgttttgctgaatgtagaaagaaaagggctatgattacaatgagagaggctctagtgggaaat |
30518359 |
T |
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| Q |
133 |
accaattcaatcagaaaatcagaatctcgcctgaaattggctctaacttctttcaaaatcc |
193 |
Q |
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| T |
30518360 |
accaactcaagcggaaaattagaatctcgcctgaaatcggctctaacttccatcaaaatcc |
30518420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 30505092 - 30505163
Alignment:
| Q |
64 |
ttcagctattttgctgaatgtagaaagaaaagggctatgattacaatgagagagg-ctttagtgggaaatacc |
135 |
Q |
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| T |
30505092 |
ttcagctgttttgctgaaagtagaaa-aaaggggcgatgattacaatgagagaggtctttagtgggaaatacc |
30505163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 30520060 - 30520167
Alignment:
| Q |
47 |
attcactgttctttgtcttcagctattttgctgaatgtagaaagaaaagggctatgattacaatgagagagg-ctttagtgggaaata-ccaattcaatc |
144 |
Q |
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| T |
30520060 |
attcattgttcattgctttcagctgttttgctgaaggtagaaa-aatggggcgatgattacaatgagagaggtctgtagtgggaaatacccaatttaatc |
30520158 |
T |
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| Q |
145 |
agaaaatca |
153 |
Q |
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| T |
30520159 |
ggaaaatca |
30520167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 30521956 - 30522041
Alignment:
| Q |
76 |
gctgaatgtagaaagaaaagggctatgattacaatgagagagg-ctttagtgggaaata----ccaattcaatcagaaaatcagaa |
156 |
Q |
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| T |
30521956 |
gctgaaggtaaaaagaaaggggccatgattataatgagagaggcctttagtgggaaataatacccaattcaatcggaaaatcagaa |
30522041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 30485599 - 30485691
Alignment:
| Q |
64 |
ttcagctattttgctgaatgtagaaagaaaagggctatgattacaatgagaga---ggctttagtgggaaata-ccaattcaatcagaaaatca |
153 |
Q |
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| T |
30485599 |
ttcagctgttttgctgaaagtagaaa-aatggggcaatgattacaatgagagagaggtctttagtgggaaatacccaatttattcagaaaatca |
30485691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 30506515 - 30506642
Alignment:
| Q |
34 |
aagcgtggattatattcactgttctttgtcttcagctattttgctgaatgtagaaagaaaagggctatgattacaatgagagaggc-tttagtgggaaat |
132 |
Q |
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| T |
30506515 |
aagcgtgggttagattcattgttcattgctttcagctgatttgatgaaggtataaagaaaagggagattattataacgagagaggcctttagtgggaaat |
30506614 |
T |
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| Q |
133 |
ac----caattcaatcagaaaatcagaa |
156 |
Q |
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| T |
30506615 |
aataatcaattcaatcggaaaatcagaa |
30506642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 30502661 - 30502726
Alignment:
| Q |
64 |
ttcagctattttgctgaatgtagaaagaaaagggctatgattacaatgagagagg-ctttagtggg |
128 |
Q |
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| T |
30502661 |
ttcagctgttttgccgaaggtattaagaaaagggcgatgattacaacgagagaggcctttagtggg |
30502726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 29265212 - 29265261
Alignment:
| Q |
87 |
aaagaaaagggctatgattacaatgagagagg-ctttagtgggaaatacc |
135 |
Q |
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| T |
29265212 |
aaagaaaggggcgatgattacaatgagagaggcctttagtgggaaatacc |
29265261 |
T |
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