View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12617_low_19 (Length: 250)
Name: NF12617_low_19
Description: NF12617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12617_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 27625568 - 27625804
Alignment:
| Q |
1 |
tgtatgtatcagaaggataaagggtaacgtgttttaccaagctaatatcttcattgttttatgcttgaagggatttcatgtggaacaatctgacaggcac |
100 |
Q |
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| T |
27625568 |
tgtatgtatcagaaggataaatggtaacgtgttctaccaagctaatatcttcattgttttatgcttgaagggatttcatgtggaacaatctgacaggcac |
27625667 |
T |
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| Q |
101 |
aataccaaaggaaattggacaaattacatcattgagactcttgtaagaactttaccaaagaagatgaattattagtattgatcctcatcaaattttgttt |
200 |
Q |
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| T |
27625668 |
aataccaaaggaaattggacaaattacatcattgagactcttgtaagaactttaccaaagaagatgaattattagtattgatcctcatcaaattttgttt |
27625767 |
T |
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| Q |
201 |
taaggtggtgttgtctgtcctacttgatactgtctct |
237 |
Q |
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| T |
27625768 |
taaggtggtgttgtctgtcctacttgatactgtctct |
27625804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 4 - 180
Target Start/End: Original strand, 6857084 - 6857260
Alignment:
| Q |
4 |
atgtatcagaaggataaagggtaacgtgttttaccaagctaatatcttcattgttttatgcttgaagggatttcatgtggaacaatctgacaggcacaat |
103 |
Q |
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|||||| ||||||||||| ||| | ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
6857084 |
atgtatgagaaggataaatggttatgtgttataccattctaatatcttcattgttttatgcttgaaggaatttcatgtggaacaatctgataggcacaat |
6857183 |
T |
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| Q |
104 |
accaaaggaaattggacaaattacatcattgagactcttgtaagaactttaccaaagaagatgaattattagtattg |
180 |
Q |
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| T |
6857184 |
accgaaggaaattggacatattacatcattgatactcttgtaagaaccttaccaaagaagatgaattattagtattg |
6857260 |
T |
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