View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12617_low_3 (Length: 422)
Name: NF12617_low_3
Description: NF12617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12617_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Complemental strand, 37842937 - 37842533
Alignment:
| Q |
16 |
ttatcttcacctgatacgttgaattcgtaagcatatctggttccaatcaatccagctcccctaccaatataccattgctttagatcttccgtatctgatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37842937 |
ttatcttcacctgatacgttgaattcgtaagcatatctggttccaatcaatccagctcccctaccaatataccattgctttagatcttccgtatctgatt |
37842838 |
T |
|
| Q |
116 |
cctttctaaggaaacgccttctaattattattaccagcacaacagaaatcaatatagaggatccaatttcaatcatcacaatttgaacattactgatacc |
215 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37842837 |
cctttctaaggaaacgcctttgaattattattaccagcacaacagaaatcaatatagaggatccaatttcaatcatcacaatttgaacattactgatacc |
37842738 |
T |
|
| Q |
216 |
tttgtgatcggttgatttggag--acatggatttacataactagttttaatgcaacttaaacaactgacacatatgagaggattacccatgaatgatgat |
313 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37842737 |
tttgtgatcggttgatttggagacacatggatttacataactagttttaatgcaacttaaacaactgacacatatgagaggattacccatgaatgatgat |
37842638 |
T |
|
| Q |
314 |
ggtgaggaattcaataacttcattagacctgttggtacagaaccattgaagagattgtgagaaatattgacctcaattaatgaaacaagacttccaagtg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37842637 |
ggtgaggaattcaataacttcattagacctgttggtacagaaccattgaagagattgtgagaaatattgacctcaattaatgaaacaagacttccaagtg |
37842538 |
T |
|
| Q |
414 |
cgtct |
418 |
Q |
| |
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||||| |
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| T |
37842537 |
cgtct |
37842533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 138 - 403
Target Start/End: Complemental strand, 28089684 - 28089418
Alignment:
| Q |
138 |
aattattattaccagcacaacagaaatcaatatagaggatccaatttcaatcatcacaatttgaacattactgatacctttgtgatcggttgatttggag |
237 |
Q |
| |
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||||||||| ||||||||| ||||||||||||| |||||||||| ||| |||||||||||||||||||||| |||| |||| ||||||||||||||| || |
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| T |
28089684 |
aattattatcaccagcacatcagaaatcaatattgaggatccaagttctatcatcacaatttgaacattaccgataactttatgatcggttgatttgtag |
28089585 |
T |
|
| Q |
238 |
aca--tggatttacataactagttttaatgcaacttaaacaactgacacatatgagaggattacccatgaatgatgatggtgaggaattcaataacttca |
335 |
Q |
| |
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||| |||||||||||||||||||||||||||| || ||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
28089584 |
acacatggatttacataactagttttaatgcaa-ttcaacaactaaaacatatgagaggattgcccatgaatgatgatggtgaggaattcaataaactca |
28089486 |
T |
|
| Q |
336 |
ttagacctgttggtacagaaccattgaagagattgtgagaaatattgacctcaattaatgaaacaaga |
403 |
Q |
| |
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||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28089485 |
ttagagctaatggtacaaaaccattgaagagattgtaagaaatattgacctcaattaatgaaacaaga |
28089418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 141 - 411
Target Start/End: Complemental strand, 37837193 - 37836921
Alignment:
| Q |
141 |
tattattaccagcacaacagaaatcaatatagaggatccaatttcaatcatcacaatttgaacattactgatacctttgtgatcggttgatttggagaca |
240 |
Q |
| |
|
|||||| |||| |||| ||||||||||||| |||||||||| | | ||||| ||||||||||||| |||||||||||| ||||| ||||||||| ||||| |
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| T |
37837193 |
tattatcaccatcacagcagaaatcaatattgaggatccaagtactatcattacaatttgaacataactgatacctttatgatcagttgatttgtagaca |
37837094 |
T |
|
| Q |
241 |
--tggatttacataactagttttaatgcaacttaaacaactgacacatatgagaggattacccatgaatgatgatggtgaggaattcaataacttcatta |
338 |
Q |
| |
|
||||||||||| ||||||| |||||||| | |||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37837093 |
catggatttacattactagttataatgcaattcaaacaacttacacataggaaaggattacccatgaatgatgatggtgaggaattcaataacctcatta |
37836994 |
T |
|
| Q |
339 |
gacctgttggtacagaaccattgaagagattgtgagaaatattgacctcaattaatgaaacaagacttccaag |
411 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
37836993 |
gacctgttggtacagatccattgaagagattgaaagaaatattgacctcaattaatgaaacaagacctccaag |
37836921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 158 - 411
Target Start/End: Complemental strand, 37831472 - 37831217
Alignment:
| Q |
158 |
cagaaatcaatatagaggatccaatttcaatcatcacaatttgaacattactgatacctttgtgatcggttgatttggagaca--tggatttacataact |
255 |
Q |
| |
|
||||||| ||||| |||||||||| ||| |||| ||||||||||||||||| ||||||||||||||| ||||| ||| ||||| ||||||||||||||| |
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| T |
37831472 |
cagaaataaatattgaggatccaagttctatcaacacaatttgaacattaccgatacctttgtgatcagttgacttgtagacacatggatttacataact |
37831373 |
T |
|
| Q |
256 |
agttttaatgcaacttaaacaactgacacatatgagaggattacccatgaatgatgatggtgaggaattcaataacttcattagacctgttggtacagaa |
355 |
Q |
| |
|
||||| ||||||||| |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37831372 |
agtttcaatgcaactcaaacaactaacacataggagaggactacccatgaatgatgatggtgaggaattcagtaacttcattagacctgttggtacagaa |
37831273 |
T |
|
| Q |
356 |
ccattgaagagattgtgagaaatattgacctcaattaatgaaacaagacttccaag |
411 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||| |||| |||||||||||| |||| |
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|
| T |
37831272 |
ccattgaagagattgtaagaaacattgatatcagttaacgaaacaagactttcaag |
37831217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 283 - 404
Target Start/End: Complemental strand, 37850428 - 37850307
Alignment:
| Q |
283 |
acatatgagaggattacccatgaatgatgatggtgaggaattcaataacttcattagacctgttggtacagaaccattgaagagattgtgagaaatattg |
382 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| |||||||||| |
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| T |
37850428 |
acataggagaggattacccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattg |
37850329 |
T |
|
| Q |
383 |
acctcaattaatgaaacaagac |
404 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
37850328 |
acctcaattaatgaaacaagac |
37850307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 138 - 404
Target Start/End: Complemental strand, 36865943 - 36865675
Alignment:
| Q |
138 |
aattattattaccagcacaacagaaatcaatatagaggatccaatttcaatcatcacaatttgaacattactgatacctttgtgatcggttgatttggag |
237 |
Q |
| |
|
||||||||| ||| |||| |||||| ||||| |||| ||||| ||| ||||||||||||||||||||| |||||||||||||||| |||| |||| || |
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|
| T |
36865943 |
aattattatcaccgccacaccagaaacaaatattgagggtccaagttctatcatcacaatttgaacattaatgatacctttgtgatcagttggtttgtag |
36865844 |
T |
|
| Q |
238 |
a--catggatttacataactagttttaatgcaacttaaacaactgacacatatgagaggattacccatgaatgatgatggtgaggaattcaataacttca |
335 |
Q |
| |
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| |||||||||| | |||||||||||| |||| | ||||| || ||||||| |||||||||||||||||| ||||| |||||||||||||||||| | | |
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| T |
36865843 |
atacatggatttataaaactagttttaaagcaattcaaacatctaacacataggagaggattacccatgaacgatgacggtgaggaattcaataacctaa |
36865744 |
T |
|
| Q |
336 |
ttagacctgttggtacagaaccattgaagagattgtgagaaatattgacctcaattaatgaaacaagac |
404 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
36865743 |
ttagacgtgttggtacagaaccattgaaaagattgtaataaatattgacctcaattaatgaaacaagac |
36865675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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