View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12617_low_5 (Length: 388)
Name: NF12617_low_5
Description: NF12617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12617_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 377
Target Start/End: Complemental strand, 45205993 - 45205639
Alignment:
| Q |
20 |
cacaggacatgtgtttttattgatttttaattcaaagaatt-aacaatatcggggataaaagtgatagtttgtacatcattgaaatatgtgtaatttaca |
118 |
Q |
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| T |
45205993 |
cacaggacatgtgtttt-attgatttctaattcaaagaatttaacaatatcagggataaaagtgatagtttgtacatcactgaaatatgtgtaatttaca |
45205895 |
T |
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| Q |
119 |
cttctgatccatctcaatcaacttatgtaacacatcaagtaactattttactgnnnnnnnngtttgttgagaatttgactgtatcttttaatacatagga |
218 |
Q |
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| T |
45205894 |
cttctgatccatctcaatcaacttatgtaacacatcaagtaactattttactgtttttt---tttgttgagaattttactgtatcttttaatacatagga |
45205798 |
T |
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| Q |
219 |
tgagaagaagcaatatttctgattttatttatgaattattgtaattatgcaggtcattttctattgacaaatcttttgttggatactatgaagaaaacaa |
318 |
Q |
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| T |
45205797 |
tgagaagaagcaatatttctgattttatttatgaattattgtaattacgcaggtcattttctcttgacaaatcttttgttggatactatgaagaaaacaa |
45205698 |
T |
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| Q |
319 |
cacgcaaaagtaagaaagaaggaagaattgttaatgtcgcctcagaggctcacaggttc |
377 |
Q |
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| T |
45205697 |
cacgcaaaagtaagaaagaaggaagaattgttaatgtcgcctcagaggctcataggttc |
45205639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 258 - 356
Target Start/End: Complemental strand, 45247389 - 45247291
Alignment:
| Q |
258 |
tgtaattatgcaggtcattttctattgacaaatcttttgttggatactatgaagaaaacaacacgcaaaagtaagaaagaaggaagaattgttaatgtc |
356 |
Q |
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| T |
45247389 |
tgtaattgtgcaggtcattttctcttgacaaatcttttgttggacacaatgaaaaaaacagcacaccaaagtaagaaagaaggaagaattgttaatgtc |
45247291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 258 - 356
Target Start/End: Complemental strand, 45231554 - 45231456
Alignment:
| Q |
258 |
tgtaattatgcaggtcattttctattgacaaatcttttgttggatactatgaagaaaacaacacgcaaaagtaagaaagaaggaagaattgttaatgtc |
356 |
Q |
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| T |
45231554 |
tgtaattgtacaggtcattttctcttgacaaatcttttgttggacacaatgaagaaaacagcacaccaaagtaaaaaagaaggaagaattgttaatgtc |
45231456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 268 - 372
Target Start/End: Complemental strand, 45212608 - 45212504
Alignment:
| Q |
268 |
caggtcattttctattgacaaatcttttgttggatactatgaagaaaacaacacgcaaaagtaagaaagaaggaagaattgttaatgtcgcctcagaggc |
367 |
Q |
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| T |
45212608 |
caggtcattttctcttgacaaatcttttgttggacactatgaagaaaacagctagtgaaagtaagactgaaggaagaattgttaatgtctcctcagaagc |
45212509 |
T |
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| Q |
368 |
tcaca |
372 |
Q |
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||||| |
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| T |
45212508 |
tcaca |
45212504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 356
Target Start/End: Complemental strand, 19277506 - 19277418
Alignment:
| Q |
268 |
caggtcattttctattgacaaatcttttgttggatactatgaagaaaacaacacgcaaaagtaagaaagaaggaagaattgttaatgtc |
356 |
Q |
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| T |
19277506 |
caggtcattttcttttaacaaaccttttgttagacactatgaagaaaacagcaaatgaaagcaagaaagaaggaagaattattaatgtc |
19277418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 356
Target Start/End: Complemental strand, 19294937 - 19294849
Alignment:
| Q |
268 |
caggtcattttctattgacaaatcttttgttggatactatgaagaaaacaacacgcaaaagtaagaaagaaggaagaattgttaatgtc |
356 |
Q |
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| T |
19294937 |
caggtcattttcttttaacaaaccttttgttagacactatgaagaaaacagctaatgaaagcaagaaagaaggaagaattattattgtc |
19294849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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