View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12617_low_7 (Length: 372)
Name: NF12617_low_7
Description: NF12617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12617_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 8004300 - 8003982
Alignment:
| Q |
19 |
ttttgcagcaacaatacgctgttccgaatcaagatatgcacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgat |
118 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004300 |
ttttgcagcaacaatacgctgttctgaatcaagatatgcacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgat |
8004201 |
T |
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| Q |
119 |
tagaaaactataaatgctatttagtttaaaatgaatagatgtctaaagtagcaaaatcaaacacgcaacaaagctgagtgatatagttctaaaaatcttg |
218 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
8004200 |
tagaaaactataaatactatttagtttaaaatgaatagatgtctaaagcaggaaaaacaaacacgcaacaaagctgagtgatatagttccaaaagtcttg |
8004101 |
T |
|
| Q |
219 |
ctacaacatcatcacaaatagaacagtaatggatcgtgaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaat |
318 |
Q |
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| T |
8004100 |
ccacaacatcatcacaaatagaacagtaatgaatcgtgaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacagacatagatcaat |
8004001 |
T |
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| Q |
319 |
cacaacaaattcaagtttc |
337 |
Q |
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||||||||||||||||||| |
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| T |
8004000 |
cacaacaaattcaagtttc |
8003982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 7900806 - 7901123
Alignment:
| Q |
19 |
ttttgcagcaacaatacgctgttccgaatcaagatatgcacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgat |
118 |
Q |
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||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7900806 |
ttttgcaactacaatacgctgttcggaatcaagatatgcacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgat |
7900905 |
T |
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| Q |
119 |
tagaaaactataaatgctatttagtttaaaatgaatagatgtctaaagtagcaaaatcaaacacgcaacaaagctgagtgatatagttctaaaaatcttg |
218 |
Q |
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|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7900906 |
taaaaaactataaatactatttagtttaaaatgaatagatgtctaaagtagcaaaatcaaacacacaacaaagctgagtgatatagttctaaaaatcttg |
7901005 |
T |
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| Q |
219 |
ctacaacatcatcacaaatagaacagtaatggatcgtgaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaat |
318 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| |
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| T |
7901006 |
ctacaacatcatcacaaatagaacagtaatgaatcgtgaattcaattaatattttgtttgaagtaaaatgtatacattaaagagatataaatagatcaat |
7901105 |
T |
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| Q |
319 |
cacaacaaattcaagttt |
336 |
Q |
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|||||||||| ||||||| |
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| T |
7901106 |
cacaacaaatccaagttt |
7901123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 51518620 - 51518515
Alignment:
| Q |
19 |
ttttgcagcaacaatacgctgttccgaatcaagatatgcacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgat |
118 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51518620 |
ttttgcagcaacaatacgctgttcggaatcaagatatgcacttggctcatctatcagatagatgtctgcaggctgttgttgtaggacaatagcaactgat |
51518521 |
T |
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| Q |
119 |
tagaaa |
124 |
Q |
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|||||| |
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| T |
51518520 |
tagaaa |
51518515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 7904498 - 7904579
Alignment:
| Q |
256 |
gaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaatcacaacaaattcaagtttc |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7904498 |
gaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacagacatagatcaatcacaacaaattcaagtttc |
7904579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 7902873 - 7902954
Alignment:
| Q |
256 |
gaattcaattaatattttgtttgaagtaaaatgta-tacattaaagagacaaacatagatcaatcacaacaaattcaagttt |
336 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| | | |||||||||||||||||||| ||||||| |
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| T |
7902873 |
gaattcaattaatattttgtttgaagtaaaatgtattacattaaagagatataaatagatcaatcacaacaaatccaagttt |
7902954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 237 - 337
Target Start/End: Complemental strand, 51518446 - 51518346
Alignment:
| Q |
237 |
tagaacagtaatggatcgtgaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaatcacaacaaattcaagttt |
336 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| || ||| | | ||| | |||||||||||||| ||||||| |
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| T |
51518446 |
tagaacagtaatggaatgtgaattcaattaatattttgtttgaaataaaatgtatacatttaacagatagaaatataacaatcacaacaaatccaagttt |
51518347 |
T |
|
| Q |
337 |
c |
337 |
Q |
| |
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| |
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| T |
51518346 |
c |
51518346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 1300552 - 1300778
Alignment:
| Q |
19 |
ttttgcagcaacaatacgctgttccgaatcaagatatgcacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgat |
118 |
Q |
| |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| || ||||||| |||| |
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| T |
1300552 |
ttttgcagcaataatacgctgttcggaatcaagatatgcacttggctcatctatcagataaatgtctgcaggctgttgtggtaggacgatagcaattgat |
1300651 |
T |
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| Q |
119 |
tagaaaactataaatgctatttagtttaaaatgaatag------atgtctaaagtagcaaaatcaaacacgcaacaaagctgagtgatatagttctaaaa |
212 |
Q |
| |
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||||||||| ||||| |||||| |||| |||| ||||| | ||| ||||||||||| |||| || ||||||||| || ||||||||||||||| |
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| T |
1300652 |
tagaaaactgtaaatactatttcgtttgaaataaataggagtgcacatctcaagtagcaaaa-caaagacacaacaaagccaagagatatagttctaaaa |
1300750 |
T |
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| Q |
213 |
atcttgctacaacatcatcacaaataga |
240 |
Q |
| |
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||||||| | || ||| |||||||||| |
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| T |
1300751 |
atcttgccatgacgtcagcacaaataga |
1300778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 1300798 - 1300855
Alignment:
| Q |
237 |
tagaacagtaatggatcgtgaattcaattaatattttgtttgaagtaaaatgtataca |
294 |
Q |
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|||||| |||||||||| ||||||||||||||||| |||||| ||||||||||||| |
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| T |
1300798 |
tagaaccgtaatggatcaggaattcaattaatatttattttgaaataaaatgtataca |
1300855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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