View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12617_low_8 (Length: 369)
Name: NF12617_low_8
Description: NF12617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12617_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 44112864 - 44112526
Alignment:
| Q |
20 |
aagatacaagagttgcctccacagggcattagtgaacagatacagagaaagaaggtcactggttttctttgtgtgtccaagagaagacaaagtggtgaga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44112864 |
aagatacaagagttgcctccacagggcattagtgaacagatacagagaaagaaggtcactggttttctttgtgtgtccaagagaagacaaagtggtgaga |
44112765 |
T |
|
| Q |
120 |
cccccagaaaatttgttaagcaaaaatgaggcaagaaagtaccctgattttacatggtcaagtttgtttgaatttacacaaaaacactacagagctgatg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44112764 |
cccccagaaaatttgttaagcaaaaatgaggcaagaaagtaccctgattttacatggtcaagtttgtttgaatttacacaaaaacactacagagctgatg |
44112665 |
T |
|
| Q |
220 |
ttgctacgctccaaagcttctttcagtggcattcctcttgcaacttat-attaatcatatgatatgatgatttctatttgttaatgttgccattactatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44112664 |
ttgctacgctccaaagcttctttcagtggcattcctcttgcaacttataattaatcatatgatatgatgatttctatttgttaatgttgccattactatt |
44112565 |
T |
|
| Q |
319 |
ttttacttcactttaggcgttatttccttccacaggttc |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44112564 |
ttttacttcactttaggcgttatttccttccacatgttc |
44112526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University