View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12618_high_4 (Length: 395)
Name: NF12618_high_4
Description: NF12618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12618_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 6 - 385
Target Start/End: Complemental strand, 37089043 - 37088664
Alignment:
| Q |
6 |
atactctagtagatttaatgtttctttcatgtctattttttcattcagttggcaaattagcattcttgtgcgtgacattttgcaggataatccttttagg |
105 |
Q |
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| T |
37089043 |
atactctagtagatttaatgcttatctcatgtctattttttcattcagttggcaaattagcattcttgtgcgtgacattttgcaggataatccttttagg |
37088944 |
T |
|
| Q |
106 |
cacgaaacaaacatggaaaatacacttgaatcttccatcaatccacaacacaaaaaggtatttactatgttctaccgtgttgagcacgtgtcttgttata |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37088943 |
cacgaaacaaacatggaaaatacacttgaatcttccatcaatccacaacacaaaaaggtatttactatgttctaccgtgttgagcacgtgtcttgttata |
37088844 |
T |
|
| Q |
206 |
ctcattgaagtcattaactaaattatgtttttcaaacatttttcctataaatatatgtttagatattcaaatgaaaaagattttgaaattgaaagtaaca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37088843 |
ctcattgaagtcattaactaaattatgtttttcaaacatttttcctataaatatatgtttagatattcaaatgaaaaagattttgaaattgaaagtaaca |
37088744 |
T |
|
| Q |
306 |
tggttatatatactgttgccatgccgcagatatcatccagatgggatccaatcgaagcatgtcggcctataatcagtgaa |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
37088743 |
tggttatatatactgttgccatgccgcagatatcatccagatgggatccagtcgaagcatgtcggcctataatcggtgaa |
37088664 |
T |
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