View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12618_low_1 (Length: 771)
Name: NF12618_low_1
Description: NF12618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12618_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 34 - 751
Target Start/End: Original strand, 35110887 - 35111605
Alignment:
| Q |
34 |
agactttcaaaattttgattacacacaagttttaaaatatttatattatactgaatttctttttctcaaatagtggccaggggcattagttagtattttc |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| || ||||||||||||||||||| |
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| T |
35110887 |
agactttcaaaattttgattacacacaagttttaaaatatttatattatactgaatttctttt-cttaaatagtggctagaggcattagttagtattttc |
35110985 |
T |
|
| Q |
134 |
tataaaattaaggtttatttatatattttgtccttacaaatatgaattacttgagttttgtttcttgaatttgataattctttcaattttgtcttgcaaa |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
35110986 |
tataaaattaaggtttatttatatattttgtccttacaaatatgaattacttgagttttatttcttaaatttgataattctttcaattttgtcttgcaaa |
35111085 |
T |
|
| Q |
234 |
tagtaatcacttcattttttgtttccgaacccatttaatttgtgccacgtgactaatttgctgacttctcacagctgattaggtaagtcagttgttgagt |
333 |
Q |
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||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35111086 |
tagtaatcacttcattttttgttcccgagcctatttaatttgtgccacgtgactaatttgctgacttctcacagctgattaggtaagtcagttgttgagt |
35111185 |
T |
|
| Q |
334 |
cacaaaaataaaggaaagactaacgaaaatgcccctgaggtttcaggtaagt--gcgaaatgacaaaactgccattatcttcttaaaaaacccaatcctt |
431 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
35111186 |
cacaaaaataaaggaaagactaacgaaaatgcccctgaggtttcaggcaagtgcgcgaaatgacaaaattgccaatatcttcttaaaaaacccaatcctt |
35111285 |
T |
|
| Q |
432 |
aatg-ttttcttcatactctcctcccttcatcttcatcttcaatcaccattcctatcgaccctccatcgtctcacaatcgacaaacacaagcaaacggtc |
530 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
35111286 |
aatgtttttcttcatactctcctcccttcatcttcatcttcaatcaccattcctatcgaccctccaccgtctcacaattgacaaacacaagcaaacggtc |
35111385 |
T |
|
| Q |
531 |
tcactccgcttcacctccatcatcaaccttctatcttcgcatcgtcgtcgttcagttgattaaaacccagaaattgattgaactctttaacccnnnnnnn |
630 |
Q |
| |
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|||||| |||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
35111386 |
tcactctgcttcacctcgatcatcaaccttctattttcgcatcgtcatcgttcagttgattaaaacccaaaaattgattgaactcattaacccttttttt |
35111485 |
T |
|
| Q |
631 |
gtgctgatcaaccccaacccaaaatccataatttggtttatcttccatgaaaagatcaaacccaaaatttgaaacgaaatcgaacaaccccaaaatcgga |
730 |
Q |
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| T |
35111486 |
gtgccgatcaaccccaacccgaaatccataatttggtttctcttccatgaaaagatcaaacccaaaatttgaaacg-aatcaaacaaccccaaaatcgaa |
35111584 |
T |
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| Q |
731 |
atcaaacatcagcccttcgac |
751 |
Q |
| |
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| T |
35111585 |
atcaaacatcagcccttcgac |
35111605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 273
Target Start/End: Complemental strand, 43491229 - 43491109
Alignment:
| Q |
153 |
tatatattttgtccttacaaatatgaattacttgagttttgtttcttgaatttgataattctttcaattttgtcttgcaaatagtaatcacttcattttt |
252 |
Q |
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||||| ||| ||||||||||||| | | |||||||||||| ||| |||||||| |||| ||||||||||||| ||||||| | |||||||| | |||| |
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| T |
43491229 |
tatatgtttagtccttacaaataggggtcacttgagttttggttcatgaatttgttaatcctttcaattttgttttgcaaagattaatcactcgagtttt |
43491130 |
T |
|
| Q |
253 |
tgtttccgaacccatttaatt |
273 |
Q |
| |
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|| || ||||||||||||| |
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| T |
43491129 |
agtccccaaacccatttaatt |
43491109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 28858693 - 28858632
Alignment:
| Q |
184 |
ttgagttttgtttcttgaatttgataattctttcaattttgtcttgcaaatagtaatcactt |
245 |
Q |
| |
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|||||||||||| | | |||||| |||| ||||||| |||||| |||||||| ||||||||| |
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| T |
28858693 |
ttgagttttgttccattaatttgctaatcctttcaaatttgtcatgcaaatattaatcactt |
28858632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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