View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12618_low_13 (Length: 224)
Name: NF12618_low_13
Description: NF12618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12618_low_13 |
 | |
|
| [»] scaffold0289 (2 HSPs) |
| | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0289 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 13725 - 13533
Alignment:
| Q |
18 |
aatgtcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactgg |
117 |
Q |
| |
|
||||| ||||||||| |||| | |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
13725 |
aatgttattaaagatatagcgaatgctttatgctatatgcaccatgattgcacccctccaattgttcatcgagatatatcaagcaagaatattcttctgg |
13626 |
T |
|
| Q |
118 |
atttagaatatgtggctcgtgtctcggactttggaacagctaagcttcttaattctaattcagacaattggacctcatttgcaggcacctatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13625 |
atttagaatatgtggctcgtgtctcggactttggaacagctaagcttcttgatgctaattcagacaattggacctcatttgcaggcacctatg |
13533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 4892 - 4776
Alignment:
| Q |
18 |
aatgtcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactgg |
117 |
Q |
| |
|
||||| ||||||||| |||| | |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
4892 |
aatgttattaaagatatagcgaatgctttatgctatatgcaccatgattgcacccctccaattgttcatcgagatatatcaagcaagaatattcttctgg |
4793 |
T |
|
| Q |
118 |
atttagaatatgtggct |
134 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4792 |
atttagaatatgtggct |
4776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 15664566 - 15664374
Alignment:
| Q |
18 |
aatgtcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactgg |
117 |
Q |
| |
|
||||| ||||||||| |||| | |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
15664566 |
aatgttattaaagatatagcgaatgctttatgctatatgcaccatgattgcacccctccaattgttcatcgagatatatcaagcaagaatattcttctgg |
15664467 |
T |
|
| Q |
118 |
atttagaatatgtggctcgtgtctcggactttggaacagctaagcttcttaattctaattcagacaattggacctcatttgcaggcacctatg |
210 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15664466 |
atttagaatatgtggcttgtgtctcagactttggaacggctaagcttcttaatcctaattcagacaattggacctcatttgcaggcacctatg |
15664374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 15676401 - 15676209
Alignment:
| Q |
18 |
aatgtcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactgg |
117 |
Q |
| |
|
||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
15676401 |
aatgttattaaagatgtagctaatgctttatactatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatatcctactgg |
15676302 |
T |
|
| Q |
118 |
atttagaatatgtggctcgtgtctcggactttggaacagctaagcttcttaattctaattcagacaattggacctcatttgcaggcacctatg |
210 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||| ||| |||||||| ||| | ||| ||||||||||| ||||||| |
|
|
| T |
15676301 |
atttagaatatgtggctcgtgtctcagactttggaatagctaagcttctaaatcctaattcaaccaacttgacatcatttgcaggtacctatg |
15676209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 16173345 - 16173504
Alignment:
| Q |
18 |
aatgtcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactgg |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
16173345 |
aatgtcattaaagatgtagctaatgctttatgctatatgcaccatgattgctcgcctccaattgttcatcgagatatatcaagcaagaatattcttctgg |
16173444 |
T |
|
| Q |
118 |
atttagaatatgtggctcgtgtctcggactttggaacagctaagcttcttaattctaatt |
177 |
Q |
| |
|
||| |||| |||||||| |||||| |||||||||||||||||||||||| || |||||| |
|
|
| T |
16173445 |
attccgaatgtgtggctcatgtctctgactttggaacagctaagcttcttgatcctaatt |
16173504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 16103677 - 16103826
Alignment:
| Q |
18 |
aatgtcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactgg |
117 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||| |||| |
|
|
| T |
16103677 |
aatgtccttaaagatgtagctaatgctttatgctacatgcatcatgattgctcgcctccaattgttcacagagatatatcaagcaagaatattcttctgg |
16103776 |
T |
|
| Q |
118 |
atttagaatatgtggctcgtgtctcggactttggaacagctaagcttctt |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16103777 |
atttagaatatgtggctcgtgtctcggactttggaacagctaagcttctt |
16103826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 17825422 - 17825238
Alignment:
| Q |
18 |
aatgtcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactgg |
117 |
Q |
| |
|
|||| |||||||||| |||||| |||| |||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| | || || |
|
|
| T |
17825422 |
aatgccattaaagatatagctaatgctgtatgttatatgcatcatcattgctcacctccaattgttcatcgagatatatcaagcaagaatatacttctaa |
17825323 |
T |
|
| Q |
118 |
atttagaatatgtggctcgtgtctcggactttggaacagctaagcttcttaattctaattcagacaattggacctcatttgcagg |
202 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||| |||||||||||||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
17825322 |
atttggaatatgtggctcatgtctctgactttggaatagctaagcttcttaatcctgattcaaccaattggacctcatttgcagg |
17825238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 14606692 - 14606841
Alignment:
| Q |
18 |
aatgtcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactgg |
117 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
14606692 |
aatgtcattaaagatgtagccaatgctttatgctacatgcatcatgattgctcgcctccaattgttcatcgagatatatcaagcaagaatattcttctgg |
14606791 |
T |
|
| Q |
118 |
atttagaatatgtggctcgtgtctcggactttggaacagctaagcttctt |
167 |
Q |
| |
|
||| |||| ||||| || |||||| |||||||||||||||||||||||| |
|
|
| T |
14606792 |
attcggaatgtgtgggtcatgtctctgactttggaacagctaagcttctt |
14606841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 16025869 - 16026018
Alignment:
| Q |
18 |
aatgtcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactgg |
117 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
16025869 |
aatgtcattaaagatgtagccaatgctttatgctacatgcatcatgattgctcgcctccaattgttcatcgagatatatcaagcaagaatattcttctgg |
16025968 |
T |
|
| Q |
118 |
atttagaatatgtggctcgtgtctcggactttggaacagctaagcttctt |
167 |
Q |
| |
|
||| |||| ||||| || |||||| |||||||||||||||||||||||| |
|
|
| T |
16025969 |
attcggaatgtgtgggtcatgtctctgactttggaacagctaagcttctt |
16026018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 17849316 - 17849500
Alignment:
| Q |
18 |
aatgtcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactgg |
117 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| |||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| | || || | |
|
|
| T |
17849316 |
aatgtcattaaagatgtagctaatgctctatgttatatgcatcatcattgctcacctccgattgttcatcgagatatatcaagcaagaatatacttctag |
17849415 |
T |
|
| Q |
118 |
atttagaatatgtggctcgtgtctcggactttggaacagctaagcttcttaattctaattcagacaattggacctcatttgcagg |
202 |
Q |
| |
|
| || |||||||| |||| |||||| |||||||||| |||||| ||||| ||| || ||||| ||||||||||||||||||||| |
|
|
| T |
17849416 |
acttggaatatgtagctcatgtctctgactttggaatagctaaacttctaaatcctgattcaaccaattggacctcatttgcagg |
17849500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 169
Target Start/End: Original strand, 31103456 - 31103570
Alignment:
| Q |
55 |
tgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactggatttagaatatgtggctcgtgtctcggactttggaac |
154 |
Q |
| |
|
|||| ||||||||||||||||| ||| ||||||| |||||||| ||||||||| |||| || || | || |||| |||| |||||| |||||||| || |
|
|
| T |
31103456 |
tgcatcatgattgctcacctcctattattcatcgtgatatatcgagcaagaatattcttctcaatcttgactatgaagctcatgtctccgactttgggac |
31103555 |
T |
|
| Q |
155 |
agctaagcttcttaa |
169 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
31103556 |
agctaagtttcttaa |
31103570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 31059012 - 31059069
Alignment:
| Q |
55 |
tgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttct |
112 |
Q |
| |
|
|||| ||||||||||| ||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
31059012 |
tgcatcatgattgctcgcctcctataattcatcgcgatatatcaagcaagaatgttct |
31059069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 166
Target Start/End: Original strand, 31140815 - 31140926
Alignment:
| Q |
55 |
tgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactggatttagaatatgtggctcgtgtctcggactttggaac |
154 |
Q |
| |
|
|||| |||||||| || ||||| ||| ||||||| |||||||||||||||||||| || || || | || |||| |||| ||||| ||||||||||| |
|
|
| T |
31140815 |
tgcatcatgattgttctcctcctattattcatcgtgatatatcaagcaagaatgtccttcttaatcttgactatgaagctcaagtctccgactttggaac |
31140914 |
T |
|
| Q |
155 |
agctaagcttct |
166 |
Q |
| |
|
|||||| |||| |
|
|
| T |
31140915 |
ggctaagtttct |
31140926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 166
Target Start/End: Original strand, 31159647 - 31159758
Alignment:
| Q |
55 |
tgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactggatttagaatatgtggctcgtgtctcggactttggaac |
154 |
Q |
| |
|
|||| |||||||| || ||||| ||||||||||| |||||||| ||||||||||| || || || | || |||| |||| ||||| ||||||||||| |
|
|
| T |
31159647 |
tgcatcatgattgttctcctcctattgttcatcgtgatatatcgagcaagaatgtccttcttaatcttgactatgaagctcaagtctccgactttggaac |
31159746 |
T |
|
| Q |
155 |
agctaagcttct |
166 |
Q |
| |
|
|||||| |||| |
|
|
| T |
31159747 |
ggctaagtttct |
31159758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 166
Target Start/End: Original strand, 31241750 - 31241861
Alignment:
| Q |
55 |
tgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactggatttagaatatgtggctcgtgtctcggactttggaac |
154 |
Q |
| |
|
|||| |||||||| || ||||| ||||||||||| |||||||| ||||||||||| || || || | || |||| |||| ||||| ||||||||||| |
|
|
| T |
31241750 |
tgcatcatgattgttctcctcctattgttcatcgtgatatatcgagcaagaatgtccttcttaatcttgactatgaagctcaagtctccgactttggaac |
31241849 |
T |
|
| Q |
155 |
agctaagcttct |
166 |
Q |
| |
|
|||||| |||| |
|
|
| T |
31241850 |
ggctaagtttct |
31241861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 31184544 - 31184593
Alignment:
| Q |
63 |
gattgctcacctccaattgttcatcgagatatatcaagcaagaatgttct |
112 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| || || |||||||| |
|
|
| T |
31184544 |
gattgctcacctcctattgttcatcgtgatatatcgagtaaaaatgttct |
31184593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 7275 - 7428
Alignment:
| Q |
17 |
aaatgtcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactg |
116 |
Q |
| |
|
||||| |||||||| |||||||| |||||||||||||||||| || ||||||||||| ||||||||||||| |||||||| |||||||||||| | || |
|
|
| T |
7275 |
aaatgccattaaaggtgtagctaatgctttatgctatatgcatcacaattgctcaccttcaattgttcatcgtgatatatccagcaagaatgttgttttg |
7374 |
T |
|
| Q |
117 |
gatttagaatatgtggctcgtgtctcggactttggaacagctaagcttcttaat |
170 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||| |||||||| ||| |||||||| |
|
|
| T |
7375 |
gatttggaatatgtggctcatgtctcagacttcggaacagccaagtttcttaat |
7428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 13580 - 13713
Alignment:
| Q |
22 |
tcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactggattt |
121 |
Q |
| |
|
||||||||||| |||||| ||| |||| |||| |||| |||||||| || ||||| |||||||||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
13580 |
tcattaaagatatagctaatgccttattctatctgcatcatgattgttcccctcctattgttcatcgagatatatccagcaagaatgttattttggattt |
13679 |
T |
|
| Q |
122 |
agaatatgtggctcgtgtctcggactttggaaca |
155 |
Q |
| |
|
|||||||| |||| |||||| ||||| |||||| |
|
|
| T |
13680 |
ggaatatgtagctcatgtctcagacttcggaaca |
13713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 7919 - 8072
Alignment:
| Q |
17 |
aaatgtcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactg |
116 |
Q |
| |
|
||||| |||||||| |||||||| |||||||||||||||||| || ||||||||||| ||||||||||||| |||||||| |||||||||||| | || |
|
|
| T |
7919 |
aaatgccattaaaggtgtagctaatgctttatgctatatgcatcacaattgctcaccttcaattgttcatcgtgatatatccagcaagaatgttgttttg |
8018 |
T |
|
| Q |
117 |
gatttagaatatgtggctcgtgtctcggactttggaacagctaagcttcttaat |
170 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||| |||||||| ||| |||||||| |
|
|
| T |
8019 |
gatttggaatatgtggctcatgtctcagacttcggaacagccaagtttcttaat |
8072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 14223 - 14356
Alignment:
| Q |
22 |
tcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactggattt |
121 |
Q |
| |
|
||||||||||| |||||| ||| |||| |||| |||| |||||||| || ||||| |||||||||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
14223 |
tcattaaagatatagctaatgccttattctatctgcatcatgattgttcccctcctattgttcatcgagatatatccagcaagaatgttattttggattt |
14322 |
T |
|
| Q |
122 |
agaatatgtggctcgtgtctcggactttggaaca |
155 |
Q |
| |
|
|||||||| |||| |||||| ||||| |||||| |
|
|
| T |
14323 |
ggaatatgtagctcatgtctcagacttcggaaca |
14356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 15033241 - 15033427
Alignment:
| Q |
19 |
atgtcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactgga |
118 |
Q |
| |
|
|||| ||||||||| |||||| |||||||||||||||||| |||||||| |||||| ||||||||||||| |||||||| ||||||||||| | |||| |
|
|
| T |
15033241 |
atgttattaaagatatagctaatgctttatgctatatgcatcatgattgttcaccttcaattgttcatcgcgatatatccagcaagaatgtcattttgga |
15033340 |
T |
|
| Q |
119 |
tttagaatatgtggctcgtgtctcggactttggaacagctaagcttcttaattctaattcagacaattggacctcatttgcaggcac |
205 |
Q |
| |
|
||| |||||||| |||| |||||| |||||||||||| ||||| |||| ||| | |||||| |||| ||| || ||||||||||| |
|
|
| T |
15033341 |
tttggaatatgtagctcatgtctcagactttggaacatctaagtttctcaatcccaattcatccaatatgacttcttttgcaggcac |
15033427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 15002899 - 15003084
Alignment:
| Q |
22 |
tcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactggattt |
121 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||| |||||||| || ||||| |||||||||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
15002899 |
tcattaaagatgtagctaatgctttatgctatctgcatcatgattgttcccctcctattgttcatcgagatatatccagcaagaatgttattttggattt |
15002998 |
T |
|
| Q |
122 |
agaatatgtggctcgtgtctcggactttggaacagctaagcttcttaattctaattcagacaattggacctcatttgcaggcacct |
207 |
Q |
| |
|
|||||||| |||| |||||| || ||||||||| ||||| |||| ||| | ||||| |||| ||| || ||||||||||||| |
|
|
| T |
15002999 |
ggaatatgtagctcatgtctcagattttggaacatctaagtttctaaatcccaattcgtccaatatgacttcttttgcaggcacct |
15003084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 14504775 - 14504922
Alignment:
| Q |
23 |
cattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactggattta |
122 |
Q |
| |
|
||||||||||||||||| |||||||| ||| ||||| |||||| |||||||| ||||||||||||| |||||||| || |||||| || | ||||||| |
|
|
| T |
14504775 |
cattaaagatgtagctaatgctttatactacatgcatcatgatcgctcacctgcaattgttcatcgcgatatatcgagtaagaatattgttttggatttg |
14504874 |
T |
|
| Q |
123 |
gaatatgtggctcgtgtctcggactttggaacagctaagcttcttaat |
170 |
Q |
| |
|
||||||||||||| ||||||||| || |||||||||||| |||||||| |
|
|
| T |
14504875 |
gaatatgtggctcatgtctcggatttcggaacagctaagtttcttaat |
14504922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 15041375 - 15041518
Alignment:
| Q |
18 |
aatgtcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactgg |
117 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||| | || |||||||| || ||||| |||||||||||||||||||| |||||||||||| | ||| |
|
|
| T |
15041375 |
aatgtcattaaagatatagctaatgctttatgctatctacatcatgattgttcccctcctattgttcatcgagatatatccagcaagaatgttattttgg |
15041474 |
T |
|
| Q |
118 |
atttagaatatgtggctcgtgtctcggactttggaacagctaag |
161 |
Q |
| |
|
|||| |||||||| |||| |||||| |||||||||||| ||||| |
|
|
| T |
15041475 |
atttggaatatgtagctcatgtctcagactttggaacatctaag |
15041518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 15011794 - 15011977
Alignment:
| Q |
24 |
attaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactggatttag |
123 |
Q |
| |
|
||||||||| |||||| ||| |||| |||| |||| ||||| ||||| ||||| |||||||||||||||||||| |||||||||||| | ||||||| | |
|
|
| T |
15011794 |
attaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgagatatatccagcaagaatgttattttggatttgg |
15011893 |
T |
|
| Q |
124 |
aatatgtggctcgtgtctcggactttggaacagctaagcttcttaattctaattcagacaattggacctcatttgcaggcacct |
207 |
Q |
| |
|
||||||| |||| |||||| |||||||||||| ||||| |||| ||| | |||||| |||| ||| || ||||||||||||| |
|
|
| T |
15011894 |
aatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcatccaatatgacttcttttgcaggcacct |
15011977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 14521944 - 14521787
Alignment:
| Q |
22 |
tcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactggattt |
121 |
Q |
| |
|
||||||||||| |||||| |||||||| |||| | || ||||| ||||||||||| |||||||||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
14521944 |
tcattaaagatatagctaatgctttattctatctacatcatgactgctcacctcctattgttcatcgagatatatccagcaagaatgttattttggattt |
14521845 |
T |
|
| Q |
122 |
agaatatgtggctcgtgtctcggactttggaacagctaagcttcttaattctaattca |
179 |
Q |
| |
|
|||| ||| |||| |||||| |||||||||||| ||||| |||| ||| | |||||| |
|
|
| T |
14521844 |
ggaatgtgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattca |
14521787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 14532069 - 14531932
Alignment:
| Q |
18 |
aatgtcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactgg |
117 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||| | || ||||| ||||||||||| |||||||||||||||||||| |||||||||||| | ||| |
|
|
| T |
14532069 |
aatgtcattaaagatatagctaatgctttatgctatctacatcatgactgctcacctcctattgttcatcgagatatatccagcaagaatgttattttgg |
14531970 |
T |
|
| Q |
118 |
atttagaatatgtggctcgtgtctcggactttggaaca |
155 |
Q |
| |
|
|||| ||||| || |||| |||||| ||||| |||||| |
|
|
| T |
14531969 |
atttggaatacgtagctcatgtctcagacttcggaaca |
14531932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 15037811 - 15037955
Alignment:
| Q |
22 |
tcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactggattt |
121 |
Q |
| |
|
||||||| ||| |||||| ||||||||||||| |||| |||||||| || ||||| |||||||||||||||||||| |||||||||||| | ||||| | |
|
|
| T |
15037811 |
tcattaaggatatagctaatgctttatgctatctgcatcatgattgttcccctcctattgttcatcgagatatatccagcaagaatgttattttggatat |
15037910 |
T |
|
| Q |
122 |
agaatatgtggctcgtgtctcggactttggaacagctaagcttct |
166 |
Q |
| |
|
|||||||| |||| |||||| |||||||||||| ||||| |||| |
|
|
| T |
15037911 |
ggaatatgtagctcatgtctcagactttggaacatctaagtttct |
15037955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 14483544 - 14483691
Alignment:
| Q |
23 |
cattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactggattta |
122 |
Q |
| |
|
||||||||||||||||| |||||||| ||| ||||| |||||| |||||||| |||| |||||||| |||||||| || |||||| || | ||||||| |
|
|
| T |
14483544 |
cattaaagatgtagctaatgctttatactacatgcatcatgatcgctcaccttcaatagttcatcgcgatatatccagtaagaatattgttttggatttg |
14483643 |
T |
|
| Q |
123 |
gaatatgtggctcgtgtctcggactttggaacagctaagcttcttaat |
170 |
Q |
| |
|
||||||||||||| |||||| || || |||||||||||| |||||||| |
|
|
| T |
14483644 |
gaatatgtggctcatgtctcagatttcggaacagctaagtttcttaat |
14483691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 15017909 - 15018092
Alignment:
| Q |
24 |
attaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactggatttag |
123 |
Q |
| |
|
||||||||| |||||| ||| ||||||||| |||| |||||||| || ||||| || ||||||||||||||||| |||||||||||| | ||||||| | |
|
|
| T |
15017909 |
attaaagatatagctaatgccttatgctatctgcatcatgattgttcccctcctatagttcatcgagatatatccagcaagaatgttattttggatttgg |
15018008 |
T |
|
| Q |
124 |
aatatgtggctcgtgtctcggactttggaacagctaagcttcttaattctaattcagacaattggacctcatttgcaggcacct |
207 |
Q |
| |
|
||||||| |||| |||||| || ||||||||| ||||| |||| ||| | |||||| |||| ||| || ||||||||||||| |
|
|
| T |
15018009 |
aatatgtagctcatgtctcagattttggaacatctaagtttctaaatcccaattcatccaatatgacttcttttgcaggcacct |
15018092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 14468591 - 14468739
Alignment:
| Q |
18 |
aatgtcattaaagatgtagctagtgctttatgctatatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactgg |
117 |
Q |
| |
|
||||||||||| |||||||||| ||| ||| ||| ||||| |||||| ||||||| ||||||||||||| |||||||| || |||||| || | ||| |
|
|
| T |
14468591 |
aatgtcattaaggatgtagctaatgcactatactacatgcatcatgatcgctcaccatcaattgttcatcgcgatatatccagtaagaatattgttttgg |
14468690 |
T |
|
| Q |
118 |
atttagaatatgtggctcgtgtctcggactttggaacagctaagcttct |
166 |
Q |
| |
|
|||| ||||||||||||| |||||| || || |||||||||||| |||| |
|
|
| T |
14468691 |
atttggaatatgtggctcatgtctcagatttcggaacagctaagtttct |
14468739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 17028662 - 17028780
Alignment:
| Q |
52 |
atatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactggatttagaatatgtggctcgtgtctcggactttgg |
151 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||| |||||||| || ||||||||| | ||||||| |||||||| |||| |||||| || || || |
|
|
| T |
17028662 |
atatgcatgatgattgctcaccttcaattgttcatcgtgatatatccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcgg |
17028761 |
T |
|
| Q |
152 |
aacagctaagcttcttaat |
170 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
17028762 |
aacagctaagtttcttaat |
17028780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 17559098 - 17559216
Alignment:
| Q |
52 |
atatgcaccatgattgctcacctccaattgttcatcgagatatatcaagcaagaatgttctactggatttagaatatgtggctcgtgtctcggactttgg |
151 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||| |||||||| || ||||||||| | ||||||| |||||||| |||| |||||| || || || |
|
|
| T |
17559098 |
atatgcatgatgattgctcaccttcaattgttcatcgtgatatatccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcgg |
17559197 |
T |
|
| Q |
152 |
aacagctaagcttcttaat |
170 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
17559198 |
aacagctaagtttcttaat |
17559216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University