View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12618_low_14 (Length: 223)
Name: NF12618_low_14
Description: NF12618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12618_low_14 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14321041 - 14321262
Alignment:
| Q |
1 |
aagcggagccacataccatcaactccctggaacaaatgtcagcaagctaaacagctctttcgaactccacaatccaagccaaacatagagaacaacgaga |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
14321041 |
aagcggacccacataccatcaactccctggaacaaatgtcaacaagctaaacggctctttctaac-ccacaatccaagccaaacatagagaacgacgaga |
14321139 |
T |
|
| Q |
101 |
tatcatattagtcagaatcaatcatgagatacatatattaagagggcaaacaactgaaagacgatgctcatcacagtccgccggtggcacctgaaacaac |
200 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
14321140 |
tatcatattagtcaaaatcgatcatgagatacatatattaagggggcaaacaattgaaagacgatgctcatcatagtccgccggtggcaccttaaacaac |
14321239 |
T |
|
| Q |
201 |
cgcgactaatataaaaaacacca |
223 |
Q |
| |
|
|||||| ||||| |||||||||| |
|
|
| T |
14321240 |
cgcgacgaatatcaaaaacacca |
14321262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University