View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12618_low_2 (Length: 672)
Name: NF12618_low_2
Description: NF12618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12618_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Original strand, 473773 - 474215
Alignment:
| Q |
19 |
catgcttctcgtcacttccacttctccggtaccaaatttcttcgccgtccttgaattcgccgccgtaaccaccaactcattcaacaacccaaataccgtt |
118 |
Q |
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| T |
473773 |
catgcttctcgtcacttccacttctccggtaccaaatttcttcgccgtccttgaattcgccgccgtaaccaccaactcattcaacaacccaaacaccgtt |
473872 |
T |
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| Q |
119 |
tcattgaaccgttcaaagtcaacaccagaaacatttttaccatttttaggatttaacctaggttcaatactgtaatatctaaaaaatttgttagtgtaac |
218 |
Q |
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| T |
473873 |
tcattgaaccgttcaaagtcaacaccagaaacatttttaccatttttaggatttaacctaggttcaatactgtaatatctaaaaaatttgttagtgtaac |
473972 |
T |
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| Q |
219 |
gaagaagacattcttcataccaaataatagcttctgtttgatttgtacaacgtcgtttgatctgtgtagccgcgtcagtaacacagttttgacaagttgt |
318 |
Q |
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| T |
473973 |
gaagaagacattcttcataccaaataatagcttctgtttgatttgtacaacgtcgtttgatctgtgtagccgcgtcagtaacacagttttgacaagttgt |
474072 |
T |
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| Q |
319 |
tgtgttgacatcaccacgacagagaaagattccgttaacagcgttggttgttccaaaacccatgatggtcatgtagtaaccatcttgttgttgagaagag |
418 |
Q |
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| T |
474073 |
tgtgttgacatcaccacgacagagaaagattccgttaacagcgttggttgttccaaaacccatgatggtcatgtagtaaccatcttgttgttgagaagag |
474172 |
T |
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| Q |
419 |
ttgggtgaaagagaattgaggaggacattgaggtttgtagata |
461 |
Q |
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| T |
474173 |
ttggttgaaagagaattgaggaggacattgaggtttgtagata |
474215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 497 - 655
Target Start/End: Original strand, 474251 - 474429
Alignment:
| Q |
497 |
cagtaagagcctagatatgttggagatgcttctgttgctaataataaggttagatagaggatggaaactacgtac---------------gaggtagtag |
581 |
Q |
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| T |
474251 |
cagtaagagcctagatatgttggagatgcttctgttgc---taataaggttagatagaggatggaaactacgtacgaccagatttgttttgaggaagtag |
474347 |
T |
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| Q |
582 |
tactcattatatt--------gttttcttttgtatgatcaataaattaaactacaatattttctttctatgggatcatgatg |
655 |
Q |
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| T |
474348 |
taatcattatattatattgtagttttcttttgtatgatcaataaattaaactacaatattttctttctatgggatcatgatg |
474429 |
T |
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