View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12618_low_3 (Length: 631)
Name: NF12618_low_3
Description: NF12618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12618_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 17 - 617
Target Start/End: Complemental strand, 42770088 - 42769488
Alignment:
| Q |
17 |
aaaaacaatattgtataacatgtcaatgtatataattaaatagtacaagggtccaaaaactatctctctgtgattataattataaatttttagaaaacaa |
116 |
Q |
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| T |
42770088 |
aaaaacaatattgtataacatgtcaatgtatataattaaatagtacaagggtccaaaaactatctctctgtgattataattataaatttttagaaaacaa |
42769989 |
T |
|
| Q |
117 |
aaacaatgctgaaattataatgtcataacttatatgattataacatagcttcaaaggcaagcacaatatgcagacataatctgcaatatcttataaaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769988 |
aaacaatgctgaaattataatgtcataacttatatgattataacatagcttcaaaggcaagcacaatatgcagacataatctgcaatatcttataaaaat |
42769889 |
T |
|
| Q |
217 |
catagctaccacaaaaaggaatagccccactggacacaagtgtatcttatatgagaccataatgtcttgtactcttatattgttagattataaattctaa |
316 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769888 |
catagctaccacaaaaaggaatagccccactagacacaagtgtatcttatatgagaccataatgtcttgtactcttatattgttagattataaattctaa |
42769789 |
T |
|
| Q |
317 |
ccaatcataataagccaaaaacatcaattcttattatagagtccactcnnnnnnnnnnnnnnnnnnnnnaaataaatctccaccaaacgcatagatagac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42769788 |
ccaatcataataagccaaaaacatcaattcttattatagagtccactctttttttcttttttcttttttaaataaatctccaccaaacgcatagatagac |
42769689 |
T |
|
| Q |
417 |
tattaatggctttccttcaaagttaagcacaaactaacttccctcaaaatcaattatgacacattcacacttttcacccctaaagacatcattagaaaac |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769688 |
tattaatggctttccttcaaagttaagcacaaactaacttccctcaaaatcaattatgacacattcacacttttcacccctaaagacatcattagaaaac |
42769589 |
T |
|
| Q |
517 |
acaaatcttttacaaaagctagctagtaacaaacatccattactacaaacatctatcaccatgttccatgtttatctcttcctcctctcactttccctat |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769588 |
acaaatcttttacaaaagctagctagtaacaaacatccattactacaaacatctatcaccatgttccatgtttatctcttcctcctctcactttccctat |
42769489 |
T |
|
| Q |
617 |
g |
617 |
Q |
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| T |
42769488 |
g |
42769488 |
T |
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