View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12618_low_4 (Length: 407)

Name: NF12618_low_4
Description: NF12618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12618_low_4
NF12618_low_4
[»] chr3 (9 HSPs)
chr3 (246-364)||(7821381-7821496)
chr3 (77-146)||(20918279-20918348)
chr3 (77-142)||(20919061-20919126)
chr3 (77-146)||(20927241-20927310)
chr3 (77-142)||(20928023-20928088)
chr3 (77-142)||(34936720-34936785)
chr3 (77-146)||(55444579-55444648)
chr3 (77-142)||(40613798-40613863)
chr3 (100-145)||(55439867-55439912)
[»] chr8 (6 HSPs)
chr8 (77-146)||(39308669-39308738)
chr8 (77-146)||(39309667-39309736)
chr8 (90-142)||(43235436-43235488)
chr8 (147-199)||(45385819-45385871)
chr8 (106-142)||(28584412-28584448)
chr8 (91-147)||(43235993-43236049)
[»] chr1 (3 HSPs)
chr1 (77-146)||(18526902-18526971)
chr1 (79-142)||(18526600-18526663)
chr1 (147-199)||(42248330-42248382)
[»] chr5 (5 HSPs)
chr5 (77-146)||(3635496-3635565)
chr5 (78-142)||(3636395-3636459)
chr5 (77-142)||(33529741-33529806)
chr5 (77-136)||(3635613-3635672)
chr5 (100-144)||(37839965-37840009)
[»] chr7 (6 HSPs)
chr7 (77-142)||(48204075-48204140)
chr7 (78-138)||(48203915-48203976)
chr7 (147-199)||(48754035-48754087)
chr7 (155-199)||(7347245-7347289)
chr7 (90-142)||(46294646-46294698)
chr7 (77-141)||(46295646-46295710)
[»] chr2 (3 HSPs)
chr2 (77-142)||(16871541-16871606)
chr2 (162-227)||(5993554-5993619)
chr2 (77-142)||(10140644-10140709)
[»] chr6 (1 HSPs)
chr6 (77-142)||(18065724-18065789)
[»] chr4 (3 HSPs)
chr4 (77-142)||(9483662-9483727)
chr4 (78-146)||(39310397-39310465)
chr4 (147-199)||(53400224-53400276)


Alignment Details
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 246 - 364
Target Start/End: Original strand, 7821381 - 7821496
Alignment:
Q  246 gaagtaataattttaggggtttggttttataatgtgaatcaacattagaaaggagtgatttaatgtaatttgatttaatgtaatatgtatgttagtgtga 345  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||  |   ||| ||||||||||| ||||||    
T  7821381 gaagtaatgattttaggggtttggttttctaatgtgaatcaacattaggaaggagtgatttaatgtaatttg--tatgtgt-atatgtatgttggtgtga 7821477  T
Q  346 cgtgaaggctgagagaaga 364  Q
    | |||||||||||||||||    
T  7821478 cctgaaggctgagagaaga 7821496  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 20918348 - 20918279
Alignment:
Q  77 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatggact 146  Q
    |||||||||||||||||||||||||||||||||| ||||||||  || ||||||| || |||||||||||    
T  20918348 gccacatgtcagtcatctatgaggtgaaaagggaaaaatggagccttcttaaatgaagtaaagatggact 20918279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 20919061 - 20919126
Alignment:
Q  77 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatg 142  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||| |||||||||| |||||||    
T  20919061 gccacatgtcagtcatctatgaggtgaaaaggaaaaaatggagttttcttaaatggagtaaagatg 20919126  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 20927310 - 20927241
Alignment:
Q  77 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatggact 146  Q
    |||||||||||||||||||||||||||||||||| ||||||||  || ||||||| || |||||||||||    
T  20927310 gccacatgtcagtcatctatgaggtgaaaagggaaaaatggagccttcttaaatgaagtaaagatggact 20927241  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 20928023 - 20928088
Alignment:
Q  77 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatg 142  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||| |||||||||| |||||||    
T  20928023 gccacatgtcagtcatctatgaggtgaaaaggaaaaaatggagttttcttaaatggagtaaagatg 20928088  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 34936785 - 34936720
Alignment:
Q  77 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatg 142  Q
    |||||||||||   |||||||| |||||||||||||||||||||| |  |||||||||||||||||    
T  34936785 gccacatgtcacaaatctatgaagtgaaaagggataaatggaggtatggtaaatggagcaaagatg 34936720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 55444579 - 55444648
Alignment:
Q  77 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatggact 146  Q
    |||||||||||  |||| || | ||||||||||||||||||||  || ||||||| ||||||||||||||    
T  55444579 gccacatgtcacacatcaataaagtgaaaagggataaatggagcattcttaaatgaagcaaagatggact 55444648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 40613798 - 40613863
Alignment:
Q  77 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatg 142  Q
    |||||||||||| ||||||  |  |||| ||||||||||||||| ||  |||||||||||||||||    
T  40613798 gccacatgtcagacatctacaaaatgaacagggataaatggaggcttgctaaatggagcaaagatg 40613863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 55439912 - 55439867
Alignment:
Q  100 gtgaaaagggataaatggaggttttttaaatggagcaaagatggac 145  Q
    ||||||||||||||||| ||  || |||||||||||||||||||||    
T  55439912 gtgaaaagggataaatgaagcattcttaaatggagcaaagatggac 55439867  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 39308738 - 39308669
Alignment:
Q  77 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatggact 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  39308738 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggtttcctaaatggagcaaagatggact 39308669  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 39309667 - 39309736
Alignment:
Q  77 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatggact 146  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||    
T  39309667 gccacatgtcaatcatctatgaggtgaaaagggataaatggaggtttcctaaatggagcaaagatagact 39309736  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 43235488 - 43235436
Alignment:
Q  90 catctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatg 142  Q
    ||||||||| ||||||||||||||||||||| ||  |||||||||||||||||    
T  43235488 catctatgaagtgaaaagggataaatggaggcttggtaaatggagcaaagatg 43235436  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 45385871 - 45385819
Alignment:
Q  147 ttttagtcccataattataaagtatctcaatttaatcatataaatcttatgtc 199  Q
    |||| |||||||||||||||||| | ||||||| ||| |||||||||||||||    
T  45385871 ttttggtcccataattataaagtgtttcaatttgatcctataaatcttatgtc 45385819  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 28584412 - 28584448
Alignment:
Q  106 agggataaatggaggttttttaaatggagcaaagatg 142  Q
    |||||||||||||||| | ||||||||||||||||||    
T  28584412 agggataaatggaggtctcttaaatggagcaaagatg 28584448  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 43235993 - 43236049
Alignment:
Q  91 atctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatggactt 147  Q
    |||||| | |||||||| |||||||||||| ||  ||||||||||||||||| ||||    
T  43235993 atctataaagtgaaaagagataaatggaggcttggtaaatggagcaaagatgcactt 43236049  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 18526902 - 18526971
Alignment:
Q  77 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatggact 146  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||  ||||||||||||| |||||||    
T  18526902 gccacatgtcagtcatctatgaggtgaaaagggataaatgaaggcttcctaaatggagcaaatatggact 18526971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 18526663 - 18526600
Alignment:
Q  79 cacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatg 142  Q
    ||||||||||||||||||||| || | | |||||||||||  ||||||||||||||||||||||    
T  18526663 cacatgtcagtcatctatgagctgcagatggataaatggaaattttttaaatggagcaaagatg 18526600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 42248382 - 42248330
Alignment:
Q  147 ttttagtcccataattataaagtatctcaatttaatcatataaatcttatgtc 199  Q
    |||| ||||||||| |||||||| |||||||||  || |||||||||||||||    
T  42248382 ttttggtcccataactataaagtgtctcaatttggtcctataaatcttatgtc 42248330  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 3635565 - 3635496
Alignment:
Q  77 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatggact 146  Q
    ||||||||||||||||||||||| |||||||||| ||||| ||  || ||||||||||||||||||||||    
T  3635565 gccacatgtcagtcatctatgagatgaaaagggaaaaatgaagtcttcttaaatggagcaaagatggact 3635496  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 3636395 - 3636459
Alignment:
Q  78 ccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatg 142  Q
    |||||||||||||||||||||| |||||||||| ||||||||  || ||||||||||||||||||    
T  3636395 ccacatgtcagtcatctatgagttgaaaagggaaaaatggagccttcttaaatggagcaaagatg 3636459  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 33529806 - 33529741
Alignment:
Q  77 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatg 142  Q
    ||||||||||||||||||||||| ||||| ||||||||| || | ||  |||||||||||||||||    
T  33529806 gccacatgtcagtcatctatgagttgaaatgggataaattgaagcttcctaaatggagcaaagatg 33529741  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 3635672 - 3635613
Alignment:
Q  77 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagca 136  Q
    ||||||||||||||||||||||| |||||||||| ||||| ||  || ||||||||||||    
T  3635672 gccacatgtcagtcatctatgagatgaaaagggaaaaatgaagtcttcttaaatggagca 3635613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 37840009 - 37839965
Alignment:
Q  100 gtgaaaagggataaatggaggttttttaaatggagcaaagatgga 144  Q
    ||||||||||||||||| ||  || ||||||||||||||||||||    
T  37840009 gtgaaaagggataaatgaagcgttcttaaatggagcaaagatgga 37839965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 48204075 - 48204140
Alignment:
Q  77 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatg 142  Q
    ||||||||||||| |||||||||||||||||||| ||||||||  || |||||| |||||||||||    
T  48204075 gccacatgtcagttatctatgaggtgaaaagggaaaaatggagccttcttaaattgagcaaagatg 48204140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 48203976 - 48203915
Alignment:
Q  78 ccacatgtcagtcatctatgaggtgaaaagggataaatggag-gttttttaaatggagcaaa 138  Q
    ||||||||||||||||||||||||||||||||| |||| |||  ||| ||||||||||||||    
T  48203976 ccacatgtcagtcatctatgaggtgaaaagggaaaaattgagtctttcttaaatggagcaaa 48203915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 48754035 - 48754087
Alignment:
Q  147 ttttagtcccataattataaagtatctcaatttaatcatataaatcttatgtc 199  Q
    |||| |||||||||||||||||| | |||||||| || |||||||||||||||    
T  48754035 ttttggtcccataattataaagtgtttcaatttagtcctataaatcttatgtc 48754087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 7347289 - 7347245
Alignment:
Q  155 ccataattataaagtatctcaatttaatcatataaatcttatgtc 199  Q
    ||||||||||||||| |||||||||  || |||||||||||||||    
T  7347289 ccataattataaagtgtctcaatttggtcctataaatcttatgtc 7347245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 46294698 - 46294646
Alignment:
Q  90 catctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatg 142  Q
    ||||||||| || |||||||||||||||||  |||  ||||||||||||||||    
T  46294698 catctatgaagtaaaaagggataaatggagcctttgcaaatggagcaaagatg 46294646  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 46295646 - 46295710
Alignment:
Q  77 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagat 141  Q
    |||||||||||  ||||||| |  |||||||||||||||||||  ||  ||||||||||||||||    
T  46295646 gccacatgtcacacatctataaaatgaaaagggataaatggagcattgataaatggagcaaagat 46295710  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 16871541 - 16871606
Alignment:
Q  77 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatg 142  Q
    ||||||||||||||||||||||| ||||| ||||||||| || | ||  |||||||||||||||||    
T  16871541 gccacatgtcagtcatctatgagttgaaatgggataaattgaagcttcctaaatggagcaaagatg 16871606  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 5993554 - 5993619
Alignment:
Q  162 tataaagtatctcaatttaatcatataaatcttatgtccttagattttttgcaaaatccattaact 227  Q
    |||||||||| | |||||  || |||||||| |||||||||||| |||||||||||||| ||||||    
T  5993554 tataaagtattttaatttggtcctataaatcctatgtccttagaatttttgcaaaatccgttaact 5993619  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 10140644 - 10140709
Alignment:
Q  77 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatg 142  Q
    ||||||||||| |||||||| | ||||| |||| ||||| |||| || ||||||||||||||||||    
T  10140644 gccacatgtcattcatctattacgtgaacaggggtaaattgaggcttcttaaatggagcaaagatg 10140709  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 18065789 - 18065724
Alignment:
Q  77 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatg 142  Q
    |||||||||||   |||||| | || |||||||||||||||||||||  |||||||||||||||||    
T  18065789 gccacatgtcatatatctataaagtaaaaagggataaatggaggtttggtaaatggagcaaagatg 18065724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 9483662 - 9483727
Alignment:
Q  77 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatg 142  Q
    |||||||||||  ||||||||| |||||||||||||||||||   |||  ||||||||||||||||    
T  9483662 gccacatgtcacacatctatgaagtgaaaagggataaatggaacctttgcaaatggagcaaagatg 9483727  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 39310465 - 39310397
Alignment:
Q  78 ccacatgtcagtcatctatgaggtgaaaagggataaatggaggttttttaaatggagcaaagatggact 146  Q
    ||||||||||  ||||||| |  ||||| ||||||||| ||||  | ||||||||||||||||||||||    
T  39310465 ccacatgtcatacatctataacttgaaatgggataaattgaggaatcttaaatggagcaaagatggact 39310397  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 53400224 - 53400276
Alignment:
Q  147 ttttagtcccataattataaagtatctcaatttaatcatataaatcttatgtc 199  Q
    |||| ||||||||| |||||||| |||||||||  || |||||||||||||||    
T  53400224 ttttggtcccataactataaagtgtctcaatttggtcctataaatcttatgtc 53400276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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