View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12618_low_6 (Length: 382)
Name: NF12618_low_6
Description: NF12618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12618_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 364
Target Start/End: Complemental strand, 49601010 - 49600657
Alignment:
| Q |
11 |
cacagaaaaaagtgacaaggttgatacttatgtgtctagcaaatcgggaatggagagccacatgcatcagaaaccttgatggcattgggagagttaacaa |
110 |
Q |
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| T |
49601010 |
cacagaaaaaagtgacaaggttgatacttatgtgtctagcaaatcgggaatggagagccacatgcatcagaaaccttgatggcattgggagagttaacaa |
49600911 |
T |
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| Q |
111 |
gtttcttaaggttaggatctttcaaatattggcaaaggcaaggcttttgttccttcagtttactgcaacaaattgcagaaggagggttggatgaaatgat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49600910 |
atttcttaaggttaggatctttcaaatattggcaaaggcaaggcttttgttccttcagtttactgcaacaaattgcagaaggagggttggatgaaatgat |
49600811 |
T |
|
| Q |
211 |
ggcatttgcacatgcacttagttgtaatgcgttgcatgttattcccattgataactctgtctttgcaagcagtacagtaagcataatgcacaatgttaca |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49600810 |
ggcatttgcacatgcacttagttgtaatgcgttgcatgttatttccattgataactctgtctttgcaagcagtacagtaagcataatgcacaatgttaca |
49600711 |
T |
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| Q |
311 |
tatgaaatcttcattttcaaagagagaaaaaaggacaattgaaaaagtttaatt |
364 |
Q |
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| T |
49600710 |
tatgaaatcttcattttcaaagagagaaaaaaggacaattgaaaaagtttaatt |
49600657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 22 - 356
Target Start/End: Original strand, 29797692 - 29798028
Alignment:
| Q |
22 |
gtgacaaggttgatacttatgt--gtctagcaaatcgggaatggagagccacatgcatcagaaaccttgatggcattgggagagttaacaagtttcttaa |
119 |
Q |
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| T |
29797692 |
gtgacaaggttgatacgtatgtacgtctagcaaatggggaatggagagccacatgcgtcagcaaccttgatggcattgggagagctaacaagtttcttaa |
29797791 |
T |
|
| Q |
120 |
ggttaggatctttcaaatattggcaaaggcaaggcttttgttccttcagtttactgcaacaaattgcagaaggagggttggatgaaatgatggcatttgc |
219 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||| |
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| T |
29797792 |
ggttaggatctttcaaatattggcaaagg-aaggcttttgttccttcagtttactgcaacaaattgcagaaggagggttggatgaagtgataacacttgc |
29797890 |
T |
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| Q |
220 |
acatgcacttagttgtaatgcgttgcatg-ttattcccattgataactctgtctttgcaagcagtacagtaagcataatgcacaatgttacatatgaaat |
318 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || ||||||||||||||||| | ||||||| |
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| T |
29797891 |
acatgcacttagttgtaatgcgttgcatgtttattcccattgataactttgtctttgcaaggagtacaacaaccataatgcacaatgttaaacatgaaat |
29797990 |
T |
|
| Q |
319 |
cttcattttcaaagagagaaaaaaggacaattgaaaaa |
356 |
Q |
| |
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||||||||||||| |||||||||||||||||| ||||| |
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| T |
29797991 |
cttcattttcaaaaagagaaaaaaggacaattcaaaaa |
29798028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 4490064 - 4489973
Alignment:
| Q |
137 |
tattggcaaaggcaaggcttttgttccttcagtttactgcaacaaattgcagaaggagggttggatgaaatgatggcatttgcacatgcactt |
229 |
Q |
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|||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| | || ||| |||||||||||||| |
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| T |
4490064 |
tattggcaaagg-aaggctttcgctccttcagtttactgcaacaaattgcagaaggagggttggatgaagttatagcacttgcacatgcactt |
4489973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 4489261 - 4489196
Alignment:
| Q |
292 |
cataatgcacaatgttacatatgaaatcttcattttcaaagagagaaaaaaggacaattgaaaaag |
357 |
Q |
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|||||| |||||||||| | || ||||||||||||||||| ||||||||||| | ||||||||||| |
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| T |
4489261 |
cataatccacaatgttaaacataaaatcttcattttcaaaaagagaaaaaagtataattgaaaaag |
4489196 |
T |
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